BAC Information

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BAC

Clone NameMSMg01-439B11
Chromosome1 (Build37)
Map Location 171,533,981 - 171,614,917
singlet/doubletdoublet
Overlap geneRgs5
Upstream geneEG383613, Nuf2
Downstream geneRgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439B11.T7 (MSMg01no439_b11.b1)MSMg01-439B11.TJ (MSMg01no439_b11.g1)
ACCAG529531AG529532
length740738
length of high quality
(start - end)
517 (42 - 558)241 (72 - 312)
definitionCHROMAT_FILE: MSMg01no439_b11.b1 PHD_FILE: MSMg01no439_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:06 2005CHROMAT_FILE: MSMg01no439_b11.g1 PHD_FILE: MSMg01no439_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,614,454 - 171,614,917)(171,533,981 - 171,534,220)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCCTAATGTTTCTTGTGAATCAGAAAAATGTTACCCCTACCCCTCCAGG
AATTGGGGTGTGTGTGTGTCCTGTAGTTTTGTTTTGTTTGTTTGCTTTGA
TTTTGTTTTTTAGAAATGTTACTCTTTAGTTCAGATGGAAACAGAACTCA
CCATGCAGCCCACACTAGCCTTAAACTCACAGTAAATATTTTGTCTCCAC
CTCTTAAGCACTTGAATTGCAAGTATGAGCCACCATTCTCAACTTTAGAA
GGCTTAACTTTCTCAAGTCAAGCATGCAGAAAGGGACCATTATGCTTGGA
ATAGCTAACCTTTTTAATGTGCCTGCCTTTCTTACTTTCTTTGTATCAAT
CATAGCAATTAGTTAATTCTGATTATAGATGATTAATCTCAACATATCCA
AAATGGGACACTTCTTAAGAGATAGTGAATAGCCATAGCTTATGGGCAGA
AGTTACTCCATCATAAACAAACTGGGAAAATATTGATATAAGGTCTAGAG
AAATGGCTCAGTAGTTAAAAGCACTGGTTATTCTTGCAGAACACCAGAGT
TTGATTCCCAGCACACACCCCCCCATCTTATCCCCTTTTGTAAATCCAGC
TCCCGCGTATTTGACACTCTCTTTTGGCCTCCTCCCGAGCCAGGAGTAAT
ACGATGGTCTTCTTCCCACCTTGTCCATTATACCCCTCCG
TGAAGTGCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTACCTCTGAAGTCATAAACAACTTGCA
AGACTCAAATAAATAAGTTGAGAACAGAGTCTGCCTTCTCGCCTTCTGTA
TGCATGCAGTATGTAAATGTGCTGCTTGAGGAGGTCCCAGGGTGAAAAAC
CACCTTGTCCATGTCCCTGTCTCATCACTGATCACTTTTACATGCACTCT
TTTTTGGATATTTGGTTCACTTTGTGTTCTCAACAGGCATCATGTTTTCA
ACACATGCTTATGTTATTATGACTCAACTGAATCACATCTTCACTGTACG
TTTCACTTTCTACAACATATTCATCTCAATAGCTCGTGTCATGTAAGGGA
GACATAGATCCTCCTCCGATATATATATGTGATATGATATATATGTGATA
TCACATATATACTTATATGTACATATACCATATTACCCATTTTTCCCCTA
TACTCCATTCATGTTTCTGCACCCTACGCTTGTCCACTTGTACCATTTTG
TTCACTCCCATGTATTTCCTTCGCATTTTTATCTCTTTACTGATTTACTC
AATTTTCTCATATCTCCTTCCTATTTTTTTCCATACTTATCATTTTATTA
CCCTTTCACTAATTCCCTCTCCTTTTTCCTCCTTTTTTTTCTCCCTCGCT
TTTTTTGTCTTCCCCATTTTTTTTCTCTCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_b11.b1 MSMg01no439_b11.b1 CHROMAT_FILE:
MSMg01no439_b11.b1 PHD_FILE: MSMg01no439_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:06 2005
         (517 letters)



>mm_chr1_171614001_171614917
          Length = 917

 Score =  897 bits (464), Expect = 0.0
 Identities = 464/464 (100%)
 Strand = Plus / Minus

                                                                       
Query: 54  tccaggaattggggtgtgtgtgtgtcctgtagttttgttttgtttgtttgctttgatttt 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tccaggaattggggtgtgtgtgtgtcctgtagttttgttttgtttgtttgctttgatttt 858

                                                                       
Query: 114 gttttttagaaatgttactctttagttcagatggaaacagaactcaccatgcagcccaca 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gttttttagaaatgttactctttagttcagatggaaacagaactcaccatgcagcccaca 798

                                                                       
Query: 174 ctagccttaaactcacagtaaatattttgtctccacctcttaagcacttgaattgcaagt 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctagccttaaactcacagtaaatattttgtctccacctcttaagcacttgaattgcaagt 738

                                                                       
Query: 234 atgagccaccattctcaactttagaaggcttaactttctcaagtcaagcatgcagaaagg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atgagccaccattctcaactttagaaggcttaactttctcaagtcaagcatgcagaaagg 678

                                                                       
Query: 294 gaccattatgcttggaatagctaacctttttaatgtgcctgcctttcttactttctttgt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaccattatgcttggaatagctaacctttttaatgtgcctgcctttcttactttctttgt 618

                                                                       
Query: 354 atcaatcatagcaattagttaattctgattatagatgattaatctcaacatatccaaaat 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atcaatcatagcaattagttaattctgattatagatgattaatctcaacatatccaaaat 558

                                                                       
Query: 414 gggacacttcttaagagatagtgaatagccatagcttatgggcagaagttactccatcat 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gggacacttcttaagagatagtgaatagccatagcttatgggcagaagttactccatcat 498

                                                       
Query: 474 aaacaaactgggaaaatattgatataaggtctagagaaatggct 517
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaacaaactgggaaaatattgatataaggtctagagaaatggct 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no439_b11.g1 MSMg01no439_b11.g1 CHROMAT_FILE:
MSMg01no439_b11.g1 PHD_FILE: MSMg01no439_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:06 2005
         (241 letters)



>mm_chr1_171533781_171534421
          Length = 641

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacctctgaagtcataaacaacttgcaagactcaaataaataagttgagaacagagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttacctctgaagtcataaacaacttgcaagactcaaataaataagttgagaacagagtc 260

                                                                       
Query: 61  tgccttctcgccttctgtatgcatgcagtatgtaaatgtgctgcttgaggaggtcccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccttctcgccttctgtatgcatgcagtatgtaaatgtgctgcttgaggaggtcccagg 320

                                                                       
Query: 121 gtgaaaaaccaccttgtccatgtccctgtctcatcactgatcacttttacatgcactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaaaaaccaccttgtccatgtccctgtctcatcactgatcacttttacatgcactctt 380

                                                                       
Query: 181 ttttggatatttggttcactttgtgttctcaacaggcatcatgttttcaacacatgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttggatatttggttcactttgtgttctcaacaggcatcatgttttcaacacatgctta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)