BAC Information

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BAC

Clone NameMSMg01-439D17
Chromosome1 (Build37)
Map Location 139,629,132 - 139,629,328
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439D17.T7 (MSMg01no439_d17.b1)MSMg01-439D17.TJ (MSMg01no439_d17.g1)
ACCAG529636AG529637
length888724
length of high quality
(start - end)
---197 (318 - 514)
definitionCHROMAT_FILE: MSMg01no439_d17.b1 PHD_FILE: MSMg01no439_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:18 2005CHROMAT_FILE: MSMg01no439_d17.g1 PHD_FILE: MSMg01no439_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTAGAATTGTAGAGTACCGTTTAATGGGTTTCCCACTATATTCGTACACA
TTCAGCGCATTTATCCCAATTATCAGAGAAAAAAGCAATACCACATAGAT
CCTGAAAATAGGCAAGACTGGCGCGTTACAAAAATTCAGAACGCAGCAGG
TGTCAAAGACCGTATAATGCCGTACTATATATACCACCTCCGCCAGCGCG
CGGCTAGTCATAATTATTTACGTTTCGCTTCGCGTAACACTCTTCCATCC
CTGCGTGTTGATCGTAACGCTACGGTTTTATATGCTACGTTGATCTATGC
GCTATGCGTGAGTAATATCCCGCTTCCCCCCCAAGATTTTTTGCCACATT
CTCCCCCTAATCTACTTTCTTGTTTAGTCGCGTATGTTCCTTAGTTTAAT
ATCCAGCCAATTTCCTATTTTTATTATCCTATGCTGCCTCCGCTGTATGG
TTAGTTCCTCCCTTCTTCTTCCGTATATAGCGCTCGATAAGTTGGCCCCC
GCTAAACGGATAGAGTGTTTACAGTAGCGTCGCAGAGCACCCTAAAGTTA
ACCGTATTGAAGGAGTGGAGACGTTCCGCGTCATATCGGTGTGTTCGACT
GTACGTGTCGTATATAGTGGACATGTTTTCCCTCCGTCCTTTTTTAACCC
GCTATCCCCGACCACATTAATACTCCCATAATATCTATTCCGTCTATTTT
CGGCAAAATTAATATAATATTCCGTGTGTAATACCGCCCCATGTTATATC
CCATATATCTTCGCCCATAGTGTCTTCGTCGGCTTAATAATTTATAACAC
CCTACTGCCGTGTACGTTTACGGGCGATTCGCAATGACGTCCCCGCGGTA
ATTACCGCCCCACTTTAACCCTAGATTTATCCTATTGC
TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCAGGAATCCATTCCCCCAGGTTTGACACAGTTTGGTGACTCCA
TACATTAACTAATGACAATAAGTATACCCCAGGACAATTGTGTTTTCCTT
TCTGTTTAAAATAGTANACTCTAGGAAATGTTCATCAATCAAACCCATCC
CCTGTAAATGCTATTGTTTTGGTAATGAAAACTCAGATGAACTCTTGATG
GCACAAATTAAGCAGAAGGAAACTAAATCCCAACCATTACAGTAAGTGCT
CACTCATGATATTATTGATCTAGAAAACAGATTTATATTTCTTCATATGC
AGATATTCCAGAGGCTGACTACAACAAGTAGACAGAGTGTCAATTATCTA
TGTTTGCAAAGAGACATTATTTTAGGCAATATCACATTGCCTGAAAATAT
TATCACATGGATTTGATCAATTTTTAGTCAAAGCAGTAATTTTGAAAAAT
AACCCTGCTGAGTACATAGTCATCAATAAAGGATTGAGTAACTCATCTGA
CAGTCTAGCCTTAATGACTAAAGCGTCTCCTTAACAAATTCAATTTGAAC
ATTTATAAGGTAATCAACTATTTTTGTTATTGACCTGTATTATCCATATC
AAGAAATCCCAAGACTCTTCCGAATATAATTCCAACACACCTTAATTAAC
TCTGCCTCTAATTCACATTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_d17.g1 MSMg01no439_d17.g1 CHROMAT_FILE:
MSMg01no439_d17.g1 PHD_FILE: MSMg01no439_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:18 2005
         (197 letters)



>mm_chr1_139628932_139629528
          Length = 597

 Score =  381 bits (197), Expect = e-110
 Identities = 197/197 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctagaaaacagatttatatttcttcatatgcagatattccagaggctgactacaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atctagaaaacagatttatatttcttcatatgcagatattccagaggctgactacaacaa 338

                                                                       
Query: 61  gtagacagagtgtcaattatctatgtttgcaaagagacattattttaggcaatatcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtagacagagtgtcaattatctatgtttgcaaagagacattattttaggcaatatcacat 278

                                                                       
Query: 121 tgcctgaaaatattatcacatggatttgatcaatttttagtcaaagcagtaattttgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgcctgaaaatattatcacatggatttgatcaatttttagtcaaagcagtaattttgaaa 218

                            
Query: 181 aataaccctgctgagta 197
           |||||||||||||||||
Sbjct: 217 aataaccctgctgagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)