Query= MSMg01no439_e05.b1 MSMg01no439_e05.b1 CHROMAT_FILE:
MSMg01no439_e05.b1 PHD_FILE: MSMg01no439_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:20 2005
(489 letters)
>mm_chr1_128429137_128430023
Length = 887
Score = 847 bits (438), Expect = 0.0
Identities = 474/486 (97%), Gaps = 2/486 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaatattatacgctaatgaaacattcataacactttttttaaaatagaactctt 63
|||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 204 ggaattcaatattatatgctaatgaaacattcataatac-tttttaaaaatagaactctt 262
Query: 64 cactgtggtaggaagttgcctacagtttccagcactctgaccaatacagatacccatggt 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 cactgtggtaggaagttgcctacagtttccagcactctgaccaatacagatatccatggt 322
Query: 124 taaaagagtctgacattatcaaacacgtcaatcctgaaatattttcaccttgaaaactaa 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaaagagtctgactttatcaaacacgtcaatcctgaaatattttcaccttgaaaactaa 382
Query: 184 acctaaacatttatctaagtagaaacacgtttccttcactccttccttttccattcagtg 243
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 383 acctaaa-atttatccaagtagaaacacatttccttcactccttccttttccattcagtg 441
Query: 244 attctttaaacacagtggtgtgccaagtattgtgcccagctgtgcagatagagcacttca 303
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 442 attctttaaacacagtggtgtgccaagtagtgtgcccagctgtgcagatagagcacttca 501
Query: 304 aaggctaatgtctcttccccagggaggttattatgtttcaagggagaaataagtaaatga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaggctaatgtctcttccccagggaggttattatgtttcaagggagaaataagtaaatga 561
Query: 364 acagttatttcaatcaagtccgtgcgtgctatggagaagatttacatatgacagaaaaga 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 562 acagttatttcaatcaagtccgtgcatgctatggagaagatttacatatgacagaaaaga 621
Query: 424 ttcgaaatgaaggcaggctgttgttcaacatttattgtcaatttgacaggctttggaatc 483
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttcgaaatgaaggcaggctgttggtcaacatttattgtcaatttgacaggctttggaatc 681
Query: 484 ctcggg 489
||||||
Sbjct: 682 ctcggg 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 887
Length adjustment: 10
Effective length of query: 479
Effective length of database: 877
Effective search space: 420083
Effective search space used: 420083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_e05.g1 MSMg01no439_e05.g1 CHROMAT_FILE:
MSMg01no439_e05.g1 PHD_FILE: MSMg01no439_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:20 2005
(241 letters)
>mm_chr1_128604973_128605613
Length = 641
Score = 435 bits (225), Expect = e-126
Identities = 237/241 (98%)
Strand = Plus / Minus
Query: 1 cccaggtgctaagaatgactttaaactcctgatcttcttgcctctgcatcccgaatattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaggtgctaagaatgactttaaactcctgatcttcttgcctctgcatcccgaatattt 382
Query: 61 ttctgcatgccaagcaagaactctaccaaccaagccacagccctggttgatacagcttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgcatgccaagcaagaactctaccaaccaagccacagccctggttgatacagcttac 322
Query: 121 taagtctaaagagttcctgggtcaccggtgttttagaccaggtagaatcccctatgtcat 180
||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 321 taagtgtaaagagttcttgggtcaccggtgttttagaccatgtagaatcccctatgccat 262
Query: 181 ctatctgttagctatggctgcatttcccaagaaacagaactgacattgtcatcccagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatctgttagctatggctgcatttcccaagaaacagaactgacattgtcatcccagtct 202
Query: 241 t 241
|
Sbjct: 201 t 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
