BAC Information

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BAC

Clone NameMSMg01-439I24
Chromosome1 (Build37)
Map Location 140,697,596 - 140,886,852
singlet/doubletdoublet
Overlap geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
Downstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439I24.T7 (MSMg01no439_i24.b1)MSMg01-439I24.TJ (MSMg01no439_i24.g1)
ACCAG529886AG529887
length738724
length of high quality
(start - end)
511 (54 - 564)491 (74 - 564)
definitionCHROMAT_FILE: MSMg01no439_i24.b1 PHD_FILE: MSMg01no439_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:43 2005CHROMAT_FILE: MSMg01no439_i24.g1 PHD_FILE: MSMg01no439_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,886,341 - 140,886,852)(140,697,596 - 140,698,086)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TCAATTTATATGCACTAAATGAAGACAGAATGTATTACTAAAGACAAAGG
AAACAGCATATATTAAAAGAGCTAGCTCATAAAATAAACTACTGGGGCCG
GGGCCGAGGCCGGGGCTGGGACATTAGCCTACAATACCTGCTACTCAGGA
GGCAGAGACAGAAGAATCAAAAATTCGAACATGACTTGGCTGCAGAGTTA
AGTTCAGGCCAACCTAGAGGTCCTGAAACAAAAGGCAACAAGGCACCGGG
GATGCAACTCAGCGCGATCACTTGACCAGCATGCATAGGAGGTGACCATC
GGAACTGTGCATCTCACAAAATAACTTCAAAGTGCATAAAGCAAAAATGA
AGCATCTGAAACATGAGACTCAAATACACAACCACATATGAAATTCTTAC
ATTCCTCTCTTAGTAATTGAAAGACACAAAAATGTCAGAAAAGACATAAA
AAATTTTGAAGAATACGACCAATCAACTTTACCTGACATTTATACACCAG
GGAAACTCCACAACTGCAGGATATAAATTCTAGTTATGGCATAATCTTCA
GCAAGACAAGCCACATTATGAAGCCTTAAAGTAGATACCCATTTTTGAGG
ACTAATAGGATATAGAGGAAATGCTCTGACTCCATTTAAAGGAAAAAAAA
GACAATTTTATTCCTTTGTACCCTTTTCCTCAAAATGG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCACAATAACTATCTGACCTAGGATG
CAAGTTTCTCTTGAAGGTCCCCTTGTCTTACCATGGTCACAGAGGAAGTG
AATGAAGTTACACTAACTGAATGTGAGTTTTTAATCATTAACAAGATGAA
ATGTTGAGACCTTAGAACCTAATAGCAGTGCATAAATTATTTAGTGGATG
GTGAGTGACGAGTGAATTCTATGAAATGCTTGAGTTTGTTCATGTATGAA
AATAATCATAACTAGACCATTTTTCTTATGATTATATATCATAGCAATGT
TACACTAATTCTAACCTTGCTTGAAGGCAGCCCTAGCGCAACTATTGCAG
CATTTTCTCAAAATTTTGGCTGTCACTTTCTCTCTTTACTTGTTCCATTT
GATGAGCCCAAATTGCATAGGGCCTAACTGTAACATCAGGGGCTAACCTC
GGGGAAAGGTTCCAGGATCTCATTACTGGTGACCTGATTGGGGATGAAAG
GGCCTGAGCTCTGCCTGTGGCACTGATAAAAAGTCTGTGTTCCCTCTCCC
CTGCCTGTTCTCTGCCAGGTTCAAGCCCAGCCTGAGTCCACCTCTTCTAC
TTGATAGAACTTTCACTCTGCGTCTGGACCCATCCTTTTTGAAGTCACTA
ATTGCCACATTTGTTTTTAAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_i24.b1 MSMg01no439_i24.b1 CHROMAT_FILE:
MSMg01no439_i24.b1 PHD_FILE: MSMg01no439_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
         (511 letters)



>mm_chr1_140886231_140887141
          Length = 911

 Score =  967 bits (500), Expect = 0.0
 Identities = 509/512 (99%), Gaps = 1/512 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttatatg-cactaaatgaagacagaatgtattactaaagacaaaggaaacagcatata 59
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttatatgaaactaaatgaagacagaatgtattactaaagacaaaggaaacagcatata 563

                                                                       
Query: 60  ttaaaagagctagctcataaaataaactactggggccggggccgaggccggggctgggac 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 ttaaaagagctagctcataaaataaactactggagccggggccgaggccggggctgggac 503

                                                                       
Query: 120 attagcctacaatacctgctactcaggaggcagagacagaagaatcaaaaattcgaacat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attagcctacaatacctgctactcaggaggcagagacagaagaatcaaaaattcgaacat 443

                                                                       
Query: 180 gacttggctgcagagttaagttcaggccaacctagaggtcctgaaacaaaaggcaacaag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gacttggctgcagagttaagttcaggccaacctagaggtcctgaaacaaaaggcaacaag 383

                                                                       
Query: 240 gcaccggggatgcaactcagcgcgatcacttgaccagcatgcataggaggtgaccatcgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaccggggatgcaactcagcgcgatcacttgaccagcatgcataggaggtgaccatcgg 323

                                                                       
Query: 300 aactgtgcatctcacaaaataacttcaaagtgcataaagcaaaaatgaagcatctgaaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aactgtgcatctcacaaaataacttcaaagtgcataaagcaaaaatgaagcatctgaaac 263

                                                                       
Query: 360 atgagactcaaatacacaaccacatatgaaattcttacattcctctcttagtaattgaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgagactcaaatacacaaccacatatgaaattcttacattcctctcttagtaattgaaa 203

                                                                       
Query: 420 gacacaaaaatgtcagaaaagacataaaaaattttgaagaatacgaccaatcaactttac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gacacaaaaatgtcagaaaagacataaaaaattttgaagaatacgaccaatcaactttac 143

                                           
Query: 480 ctgacatttatacaccagggaaactccacaac 511
           ||||||||||||||||||||||||||||||||
Sbjct: 142 ctgacatttatacaccagggaaactccacaac 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no439_i24.g1 MSMg01no439_i24.g1 CHROMAT_FILE:
MSMg01no439_i24.g1 PHD_FILE: MSMg01no439_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
         (491 letters)



>mm_chr1_140697396_140698286
          Length = 891

 Score =  895 bits (463), Expect = 0.0
 Identities = 484/491 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacaataactatctgacctaggatgcaagtttctcttgaaggtccccttgtcttacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacaataactatctgacctaggatgcaagtttctcttgaaggtccccttgtcttacca 260

                                                                       
Query: 61  tggtcacagaggaagtgaatgaagttacactaactgaatgtgagtttttaatcattaaca 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tggtcacagatgaagtgaatgaagttacactaactgaatgtgagtttttaatcattaacg 320

                                                                       
Query: 121 agatgaaatgttgagaccttagaacctaatagcagtgcataaattatttagtggatggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgaaatgttgagaccttagaacctaatagcagtgcataaattatttagtggatggtg 380

                                                                       
Query: 181 agtgacgagtgaattctatgaaatgcttgagtttgttcatgtatgaaaataatcataact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgacgagtgaattctatgaaatgcttgagtttgttcatgtatgaaaataatcataact 440

                                                                       
Query: 241 agaccatttttcttatgattatatatcatagcaatgttacactaattctaaccttgcttg 300
           |||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agaccattttacgtatgattatatatcatagcaatgttactctaattctaaccttgcttg 500

                                                                       
Query: 301 aaggcagccctagcgcaactattgcagcattttctcaaaattttggctgtcactttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggcagccctagcgcaactattgcagcattttctcaaaattttggctgtcactttctct 560

                                                                       
Query: 361 ctttacttgttccatttgatgagcccaaattgcatagggcctaactgtaacatcaggggc 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 ctttacttgttccatttgatgagcccaaattgcatggggcctaactgtaacatcaggggc 620

                                                                       
Query: 421 taacctcggggaaaggttccaggatctcattactggtgacctgattggggatgaaagggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacctcggggaaaggttccaggatctcattactggtgacctgattggggatgaaagggc 680

                      
Query: 481 ctgagctctgc 491
           || ||||||||
Sbjct: 681 ctaagctctgc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)