Query= MSMg01no439_i24.b1 MSMg01no439_i24.b1 CHROMAT_FILE:
MSMg01no439_i24.b1 PHD_FILE: MSMg01no439_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
(511 letters)
>mm_chr1_140886231_140887141
Length = 911
Score = 967 bits (500), Expect = 0.0
Identities = 509/512 (99%), Gaps = 1/512 (0%)
Strand = Plus / Minus
Query: 1 atttatatg-cactaaatgaagacagaatgtattactaaagacaaaggaaacagcatata 59
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttatatgaaactaaatgaagacagaatgtattactaaagacaaaggaaacagcatata 563
Query: 60 ttaaaagagctagctcataaaataaactactggggccggggccgaggccggggctgggac 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 ttaaaagagctagctcataaaataaactactggagccggggccgaggccggggctgggac 503
Query: 120 attagcctacaatacctgctactcaggaggcagagacagaagaatcaaaaattcgaacat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attagcctacaatacctgctactcaggaggcagagacagaagaatcaaaaattcgaacat 443
Query: 180 gacttggctgcagagttaagttcaggccaacctagaggtcctgaaacaaaaggcaacaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gacttggctgcagagttaagttcaggccaacctagaggtcctgaaacaaaaggcaacaag 383
Query: 240 gcaccggggatgcaactcagcgcgatcacttgaccagcatgcataggaggtgaccatcgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaccggggatgcaactcagcgcgatcacttgaccagcatgcataggaggtgaccatcgg 323
Query: 300 aactgtgcatctcacaaaataacttcaaagtgcataaagcaaaaatgaagcatctgaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aactgtgcatctcacaaaataacttcaaagtgcataaagcaaaaatgaagcatctgaaac 263
Query: 360 atgagactcaaatacacaaccacatatgaaattcttacattcctctcttagtaattgaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgagactcaaatacacaaccacatatgaaattcttacattcctctcttagtaattgaaa 203
Query: 420 gacacaaaaatgtcagaaaagacataaaaaattttgaagaatacgaccaatcaactttac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gacacaaaaatgtcagaaaagacataaaaaattttgaagaatacgaccaatcaactttac 143
Query: 480 ctgacatttatacaccagggaaactccacaac 511
||||||||||||||||||||||||||||||||
Sbjct: 142 ctgacatttatacaccagggaaactccacaac 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_i24.g1 MSMg01no439_i24.g1 CHROMAT_FILE:
MSMg01no439_i24.g1 PHD_FILE: MSMg01no439_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
(491 letters)
>mm_chr1_140697396_140698286
Length = 891
Score = 895 bits (463), Expect = 0.0
Identities = 484/491 (98%)
Strand = Plus / Plus
Query: 1 atcacaataactatctgacctaggatgcaagtttctcttgaaggtccccttgtcttacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacaataactatctgacctaggatgcaagtttctcttgaaggtccccttgtcttacca 260
Query: 61 tggtcacagaggaagtgaatgaagttacactaactgaatgtgagtttttaatcattaaca 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcacagatgaagtgaatgaagttacactaactgaatgtgagtttttaatcattaacg 320
Query: 121 agatgaaatgttgagaccttagaacctaatagcagtgcataaattatttagtggatggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgaaatgttgagaccttagaacctaatagcagtgcataaattatttagtggatggtg 380
Query: 181 agtgacgagtgaattctatgaaatgcttgagtttgttcatgtatgaaaataatcataact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgacgagtgaattctatgaaatgcttgagtttgttcatgtatgaaaataatcataact 440
Query: 241 agaccatttttcttatgattatatatcatagcaatgttacactaattctaaccttgcttg 300
|||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agaccattttacgtatgattatatatcatagcaatgttactctaattctaaccttgcttg 500
Query: 301 aaggcagccctagcgcaactattgcagcattttctcaaaattttggctgtcactttctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggcagccctagcgcaactattgcagcattttctcaaaattttggctgtcactttctct 560
Query: 361 ctttacttgttccatttgatgagcccaaattgcatagggcctaactgtaacatcaggggc 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 ctttacttgttccatttgatgagcccaaattgcatggggcctaactgtaacatcaggggc 620
Query: 421 taacctcggggaaaggttccaggatctcattactggtgacctgattggggatgaaagggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacctcggggaaaggttccaggatctcattactggtgacctgattggggatgaaagggc 680
Query: 481 ctgagctctgc 491
|| ||||||||
Sbjct: 681 ctaagctctgc 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|