BAC Information

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BAC

Clone NameMSMg01-440A17
Chromosome1 (Build37)
Map Location 23,967,268 - 23,967,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1
Downstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440A17.T7 (MSMg01no440_a17.b1)MSMg01-440A17.TJ (MSMg01no440_a17.g1)
ACCAG530253AG530254
length7511,607
length of high quality
(start - end)		486 (51 - 536)---
definitionCHROMAT_FILE: MSMg01no440_a17.b1 PHD_FILE: MSMg01no440_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:19 2005CHROMAT_FILE: MSMg01no440_a17.g1 PHD_FILE: MSMg01no440_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
GATCCGCGGAATTCAACAGTATAGACAACAAAAATCTGTGTATTGGGCTA
GAACTTAAAATATATTACCCTAAGAATTCTTTAAAATTTAAATATATATA
TATATATATATTCTTTTGGTTTTTAAACTAGCGATTTTGTATTTTAAATA
ATTTAGGGTTTGTAATAATTGGGGATGCAACTTGTGTGTTCTAGTAGCTT
GCTGGAAAATTCTATCAATCTACTTAGTTATTTACATTTTCTTATATGGG
ACAGTCAGTGGCAGTAGGTGAAAAGACACAGGACCTATCTGTGTTCGGCT
CTGCTGCCCTTGGTATATTGGTTGCTTCTTCATATTCTTTTCTTTATGCC
ATTATGTGACTGCTGCAGGCTGGTGCTGGAGTCACCACATCTAAGTTTCC
GGGTGGAAAAGGGGGCGTAGAGATGGCCAGGACATCTCTATATGGCTTAT
GGGTGAGGAGAGCCGCCATTACCTCATAACACAGCAAATGAGGAGAATAT
GGCTAANGCTTGGGGTGAAAGACAGGGATGCCTCTCAGGGACCTTGTTGC
TGCTCCTCAGCCTCTCCGGAACTAACCCCAAGGTATTTACCCATCCCCGG
AGCCCTGCTCCCTTCTTATAAACAACTTTGTGAGTAAGAAGTAAAATGTT
CCCAAATCCCTCAGTTTTGTAAGGGGAAGCCAGCCCCCCCTTTCTTTAAA
A

TTTTCCTCTTCCCGCGCTTGCGCGCTGTCGTGGTCAGGCTTCTCTGACAC
GAGAACGAACCCTACTCACACCATACAGTGACTATGCCATCCAACTCACC
AACAGGTAATAACGTCTGGGCTGCTCTATACTGAATATNCATAGTTGTAA
TATGTGTTCTCATATCGATGTAGAGAACTGACGTACAGATAGAATGGATG
TCGTACTAGTTTCNTACNCATAGAATAGTCTTGTATGCACAGACGCGTAT
CATATCGTCTGTGTCGTCGTTGACGCGTCTCGATGTGTCGTTCTCGTGCT
GCTTCGGCATGATCCTAGTCCTAGCGTTGTGTGAGCGTCTGTGATTCTGG
TCTCGCATCCCCTAATCGACTCACCTGTATGCGCGCGTCTGACTCAAGCC
ACACGTCTCTCGCCTGTGCACACTTNGAGTGATTACTAGTGTCCTGATTG
GATTACGTATGTTGGGGTCAGGTAGTATATATAGTGTGCTGTTCGNGTCG
CTGTAGAGTCAGNCTGTACTCGTAGTCTCTCTCNGGCATCGTTGACGNTG
CACGCCCGAGAGTGCGCGCGCGCTGGGTAGTATTGTATGTATATGTGTAG
AGATGCCCTATATATAANATATGCTTACATCTAGAGTACGTCGTGTACAT
GCAGTGAGATAGATCAGATGACAGTGTGAGTGATGACACTCATCGATCTC
AATTTGAGGTAGCGGTGTGGTGGCTGTGCGTGTACATTCTAGCGACTACA
TTGATACGTCACGTGTACGTGTGTGACGTGTTGTCTGCTGCGGCCATCTT
CTATAGATACTCACTAGTACTGATCACGGTTGTAGATGTAGAGCGTACAC
TCATCATCTACTTACTTNGCGGCGCGTCTACATGTATAGCTANCTGGCGG
CACGCATCGACGCGCCAGATAGATAGTATCATCTGTACCATATGCGACTT
GATATGACTTACGACGTATTACATATANCCCAAATCTNACACAGCATCTC
ATAACTCTCATCCTGATTAGTGTGTAGTGATGTGTCGCTACATTGTGTTA
CGTACGATATGCGAGTATATACTGACATATATGTGTCTAGTATAACNCTA
CGTCTACATCATCGACTCATGTCTCGTGCATGCTACGATGCATCGTGATG
CTCCGCTGCACTATATCGATGCTGGTCNACACTTCTACAATGCGACGAAC
ATATCCAGTACTGCATCGCGTCGACACACTAGTATCTTGTAGTACGTCGA
TGTTGACTTNATGATATCGNTCTGCGCGCCTTTCGATGTAGCTGTGACGC
GGTGAGGTCGCGTAACTCTGCATTACGATCTGACATGTACCATCATCACT
CATCCATCTGTACTTCTACTGTGCATANTNCTCGTCCACATAACCTCGCT
CACGATGTTAATGACATGCNTATGTTCNCTACGATGACATCTGTGANCGC
GCANAGAGATGTATCAGATGAGGTGTGATCGCGCGACGACTGTACTTGCC
TAATATATCTNCGTTATACGAACAGTGCTTGACATTGAGCGATCGCATGC
TCGATATTCGAGTTACGTAGGCTTGTGATCGTATGATGTAGTATGACCAT
CGAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_a17.b1 MSMg01no440_a17.b1 CHROMAT_FILE:
MSMg01no440_a17.b1 PHD_FILE: MSMg01no440_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:19 2005
         (486 letters)



>mm_chr1_23967046_23967938
          Length = 893

 Score =  833 bits (431), Expect = 0.0
 Identities = 468/493 (94%), Gaps = 22/493 (4%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcaacagtatagacaacaaaaatctgtgtattgggctagaacttaaaatatattac 68
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcaacagtagagacaacaaaaatctgtgtattgggctagaacttaaaatatattac 649

                                                                       
Query: 69  cctaagaattctttaaaatttaa--------atatatatatatatatatattcttttggt 120
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 648 cctaagaattctttaaaatttaaatatatatatatatatatatatatatattcttttggt 589

                                                                       
Query: 121 ttttaaactagcgattttgtattttaaataatttagggtttgtaataattggggatgcaa 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttttaaaatagcgattttgtattttaaataatttagggtttgtaataattggggatgcaa 529

                                                                       
Query: 181 cttgtgtgttctagtagcttgctggaaaattctatcaatctacttagttatttacatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cttgtgtgttctagtagcttgctggaaaattctatcaatctacttagttatttacatttt 469

                                                                       
Query: 241 cttatatgggacagtc-------agtggcagtaggtgaaaagacacaggacctatctgtg 293
           ||||||||||||||||       |||||||||||||||||||||||||||||||||||||
Sbjct: 468 cttatatgggacagtcagaatcaagtggcagtaggtgaaaagacacaggacctatctgtg 409

                                                                       
Query: 294 ttcggctctgctgcccttggtatattggttgcttcttcatattcttttctttatgccatt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcggctctgctgcccttggtatattggttgcttcttcatattcttttctttatgccatt 349

                                                                       
Query: 354 atgtgactgctgcaggctggtgctggagtcaccacatctaagtttccgggtggaaaaggg 413
           |||||||||||||||||||||||||||| |||||||       |||||||||||||||||
Sbjct: 348 atgtgactgctgcaggctggtgctggagacaccaca-------ttccgggtggaaaaggg 296

                                                                       
Query: 414 ggcgtagagatggccaggacatctctatatggcttatgggtgaggagagccgccattacc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ggcgtagagatggccaggacatctctatatggcttatgggtgaggagagccgccattacc 236

                        
Query: 474 tcataacacagca 486
           |||||||||||||
Sbjct: 235 tcataacacagca 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 893
Length adjustment: 10
Effective length of query: 476
Effective length of database: 883
Effective search space:   420308
Effective search space used:   420308
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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