NNNTTTGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAAACATTTCTATTATAATCAGAGAAAATCCATGGC
TGCCTTTTCTCTTATCTACTCAATATAGTAGTTACAGTTTTAGCTAAGCA
ATAATAAAACTAAAAAAGGTCAAGTGCTAAGAAACTGGACAGGAAGAGGC
CAAAGTATTGCTATTTGTAGATGATAAAATATTATATATAAATGATTCCA
AAAGTTCTACCCAGGAATTCATATGCTTGTTAATACATTCAGTGAAGTGG
CTGAATAAAAAGAAATAATAAAAAAAAAACAAGTAACAAAACAAAACAAA
AAATAAATAAACAAACAAAAAACCTGCAGCTGGCATATATATATAACTGA
AAATCATAATGAGAAGGGAATGAGGGAACCAATCCCCTTCAAAAAATAAA
ATATATTGTGGTGTAACTAATCAAGCAAGTGAAAGATCTCTATGTCAAGA
ATGTCACCTCTTTAAAGAAGCAATCAGAAGATGGAAAGATCTCCCATGTT
TATGGATCAGACTGAAAACAACCATTTTATCCAAAGCAATCTGCATATTG
AGTTTGAATCACACCAGTATTTCAAATAATTCTTTATAGACCTTTATAAA
TACTCAACATCAAATGGGGCAACACAAAATTAAGTTAGCTAATATAACCC
CGTACATAAAAGAACCTCTGGAAGTTTCCCATTTCTGATTTCAGGN

NNNNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCTGACTTATTTT
GGTAATGAACAGCAATTTGGAAATGTAAGTTGAATAAACCCTTTCCTTCA
CAATTTGCTTCCTGGTCATGATGTTTGCAGGAATAGAAACCCTGACTAAA
AACAATTTGTTTTAGTCAGGGTTTGTATTCTTTCACAGTGGTGCTGTGTA
CAACTCCATTCACTATATGCCTCATTAGCAACTCAAATCTCCATCCAGGG
ATATTTGTTTTAGTATTATAGTCAGTAATAGGTTATTTCAGGACACTCTA
GTGCCTTCAAGTTTCATCCAGTATCCTGTCTTCAGAGGCTGTGACAAGGA
GTTTTCCACCATTACTTTCTACCAACTCAATTTCCAATGCTAGACGGTTA
GGCTTTTTCATGTCCCTTCTGATTGTCACTCTGCACTTTCTCCTACCTTA
TTGGAATCATTGATTTGTTTTTTTCTTATGATTCGTCATAGAAGTTTACA
TAATTGAGAGTGTAATCTTTCAAAGAGTGAATACTGAAATGAAAGAAACT
GAAGAAAATAAACATTTAAGAAATAAAATTGAGTCTTCAACATACAGAAC
AAATGAAAATTTTCTTTTCTTGTAAATAAAACATTAAGAAAACGGATACT
CCCCGAAGAGTATGAATAAATAGATTCCN

Query= MSMg01no440_a18.g1 MSMg01no440_a18.g1 CHROMAT_FILE:
MSMg01no440_a18.g1 PHD_FILE: MSMg01no440_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:20 2005
         (544 letters)



>mm_chr1_111269250_111270192
          Length = 943

 Score =  982 bits (508), Expect = 0.0
 Identities = 536/546 (98%), Gaps = 3/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttctgacttattttggtaatgaacagcaatttggaaatgtaagttgaataaaccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 catttctgacttattttggtaatgaacagcaatttggaaatgtaagttgaataaaccctt 804

                                                                       
Query: 61  tccttcacaatttgcttcctggtcatgatgtt--tgcaggaatagaaaccctgactaaaa 118
           || ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 803 tctttcacaatttgattcctggtcatgatgtttgtgcaggaatagaaaccctgactaaaa 744

                                                                       
Query: 119 acaatttgttttagtcagggtttgtattctttcacagtggtgctgtgtacaactccattc 178
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 743 acaatttgttttaggcagggtttgtattctttcacagtgttgctgtgtacaactccattc 684

                                                                       
Query: 179 actatatgcctcattagcaactcaaatctccatccagggatatttgttttagtattatag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actatatgcctcattagcaactcaaatctccatccagggatatttgttttagtattatag 624

                                                                       
Query: 239 tcagtaataggttatttcaggacactctagtgccttcaagtttcatccagtatcctgtct 298
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcagtaataggttatttcagaacactctagtgccttcaagtttcatccagtatcctgtct 564

                                                                       
Query: 299 tcagaggctgtgacaaggagttttccaccattactttctaccaactcaatttccaatgct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcagaggctgtgacaaggagttttccaccattactttctaccaactcaatttccaatgct 504

                                                                       
Query: 359 agacggttaggctttttcatgtcccttctgattgtcactctgcactttctcctaccttat 418
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agatggttaggctttttcatgtcccttctgattgtcactctgcactttctcctaccttat 444

                                                                       
Query: 419 tggaatcattgatttgtttttttcttatgattcgtcatagaagtttacataattgagagt 478
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 tggaatcattgatttg-ttttttctcatgattcgtcatagaagtttacataattgagagt 385

                                                                       
Query: 479 gtaatctttcaaagagtgaatactgaaatgaaagaaactgaagaaaataaacatttaaga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaatctttcaaagagtgaatactgaaatgaaagaaactgaagaaaataaacatttaaga 325

                 
Query: 539 aataaa 544
           ||||||
Sbjct: 324 aataaa 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)