NNNNAAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAAGCCCATACCTAAACATGATAAAAGCAATCTACA
GCAAACCAGTAGCCAACATCAAAATAAATGGAGAGAAGCTGGTAGCAATC
CCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTT
CAACATAGTACTTGAAGTATTAGCCAGAGCAATTCAACAACAAAAGGAGA
TCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCA
GATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACT
CCTAAACCTGATAAACAGCTTCTGTGAAGTAGCTGGATATAAAATTAACT
CAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAA
GAAAATAGGGAAACATCACCCTTCTCAATAGTCACAAATAATATAAAATA
CCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCCCTATGATAAAAACT
CCAAGTCCCTGAATAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGAC
TCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGGTATCTTG
GCAAAAGAAACTACAGATTCATGCGATCCCATCAAATTCCAATCAATTCT
TCACGAATAAAAAGAAAGGTGGCATTTCTCTGGAAAAAAAAA

NAAAANGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGAATATTAAAAA
ATAATGTGTGCTCCCTGTGTCCTAAGAATCAAGAGCCTGGGTTCATGGGA
TACAGATTTGTAGAATATCAAGTAGAACTATCAAGCAAAAACTAGAGAGA
GCTGTTTTAGAGATCTCCAGAGAAAGTAGAACACAGAGAAAGAAGTCTAG
ACCACTGTCTTGAGCACAATATAGGCTGTCAGTTTGGGTCTATGATTTGA
CATTGAGTTGTTTGTTTAGCTGCTGTCAAACACCTCATCTCTCAGAAACC
CTCACCAAGCTGAGGCGGGTCCTTGGCACTAAAGGATTTGCAGGAAAGAT
ATTCAAAGAAGTCTTCCTGTCAGAATTAGAGATCAAAACTGGCTGCCACT
AAGTCCCCAGGGTCTTCAAATTGCCTACTGTCCCCAGACAGTACAATTTG
CTGTACATGAATAGGTTTGTGCCTGTTGATTACTAGACCTGATATCAGAG
GATGTAGGATCCAGAGGCTTAATATGCTCATGCATAAGTATTTTTGGTTT
TGTATCTGTGTCTGTGTAAGACGAACATCTGTGCCAGATGAGCAGAAGTC
TGTCAGATCCAGTATAGTTAGACTTTCCAGGGTTTCCAAAGCTCTTGATA
TTATTTCTGGGAACCAATTTCAGGTCTTCTAGAAG

Query= MSMg01no440_b17.g1 MSMg01no440_b17.g1 CHROMAT_FILE:
MSMg01no440_b17.g1 PHD_FILE: MSMg01no440_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:25 2005
         (513 letters)



>mm_chr1_101090640_101091552
          Length = 913

 Score =  967 bits (500), Expect = 0.0
 Identities = 509/512 (99%), Gaps = 1/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttg-aatattaaaaaataatgtgtgctccctgtgtcctaagaatcaagagcctgggtt 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttttgaaatattaaaaaataatgtgtgctccctgtgtcctaagaatcaagagcctgggtt 259

                                                                       
Query: 60  catgggatacagatttgtagaatatcaagtagaactatcaagcaaaaactagagagagct 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 catgggatacagatttgtagaatatcaagtagaaatatcaagcaaaaactagagagagct 319

                                                                       
Query: 120 gttttagagatctccagagaaagtagaacacagagaaagaagtctagaccactgtcttga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttttagagatctccagagaaagtagaacacagagaaagaagtctagaccactgtcttga 379

                                                                       
Query: 180 gcacaatataggctgtcagtttgggtctatgatttgacattgagttgtttgtttagctgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcacaatataggctgtcagtttgggtctatgatttgacattgagttgtttgtttagctgc 439

                                                                       
Query: 240 tgtcaaacacctcatctctcagaaaccctcaccaagctgaggcgggtccttggcactaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtcaaacacctcatctctcagaaaccctcaccaagctgaggcgggtccttggcactaaa 499

                                                                       
Query: 300 ggatttgcaggaaagatattcaaagaagtcttcctgtcagaattagagatcaaaactggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggatttgcaggaaagatattcaaagaagtcttcctgtcagaattagagatcaaaactggc 559

                                                                       
Query: 360 tgccactaagtccccagggtcttcaaattgcctactgtccccagacagtacaatttgctg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgccactaagtccccagggtcttcaaattgcctactgtccccagacagtacaatttgctg 619

                                                                       
Query: 420 tacatgaataggtttgtgcctgttgattactagacctgatatcagaggatgtaggatcca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tacatgaataggtttgtgcctgttgattactagacctgatatcagaggatgtaggatcca 679

                                           
Query: 480 gaggcttaatatgctcatgcataagtattttt 511
           |||||||||||||||||||||| |||||||||
Sbjct: 680 gaggcttaatatgctcatgcatgagtattttt 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)