BAC Information

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BAC

Clone NameMSMg01-440E18
Chromosome1 (Build37)
Map Location 39,920,234 - 40,093,043
singlet/doubletdoublet
Overlap geneMap4k4
Upstream geneChst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065
Downstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440E18.T7 (MSMg01no440_e18.b1)MSMg01-440E18.TJ (MSMg01no440_e18.g1)
ACCAG530447AG530448
length730756
length of high quality
(start - end)		481 (79 - 559)308 (89 - 396)
definitionCHROMAT_FILE: MSMg01no440_e18.b1 PHD_FILE: MSMg01no440_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:42 2005CHROMAT_FILE: MSMg01no440_e18.g1 PHD_FILE: MSMg01no440_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,920,234 - 39,920,714)(40,092,740 - 40,093,043)
sequence
TTTTTNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGCGAATTCCAGAGCTGTATATACCTGAACAAT
CACCATCCTAGTCAAAATACTCCAGTTACCCAGCAAGTTCCCTCCTCCAG
CCTCACACCCGACCACCAAGCCAGCCTCGATATCAGACACTGGATGCTAC
TTTGTTGCAGCGTGCTAGTGAGGACCCCACCTAGGCGAGGGTCTTACCAC
TGCTCTTTCCAGCCAGGTGACTTTTTTTTTTTTTAATATGGACGACTTTC
TCATACAGGAACCAGACCTGGAGTTCCAGCCTTTCCCAGGCTGTAGGTCA
TGACGCCTACAAAGTCTTTATGTTTACTCCTTCTACAGGAAGAACACCTG
CAGAACTTATACGCACCTCCTCATATTTGTAGAGCATCATGGTGAACTTG
GAGAGGGGATCTGCAAAGCTTTTGGAAATACTATTTTACACTTGGGAACA
CGTGGGAGTTTCTACCGACTTCCATCTTGCCCACCCTACTTCCTCCTAAG
TAAGGTTACAGGAATAAGTAAGGCTGACTACAGTCTAATGCGCCTGTATC
TCCTGTTACTTCAGGGGCAGAGGCAGGAACCTGCTTGGAGTGAGGAGTTA
ATATCACCTGAAAGGGAGGAAAAGGAAAAAGNAATATTCCCTCCCTCCCC
CTTTCTTTCTTTCTCCCCATTCCCTCTCAG

NTTTTTATTTTNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAGTGCAGG
AAATGTATCAGAGACTGACTGTCTCATATACCAACAGCTACCAAAAACAA
GATTCTATGGACCAACACTTAAAATATATGTGCACGAATCATGCTTATCG
TCAACAAAGGGATTTATCAGCCACATACAAGATGCTGTACTCACCTAGAT
CGTGATTCACATACATCGAAAACGAAACACACACAAACACTCCTAAGAAC
ACATCGCTTGATGAAATCTTTACTTTTGTTAGGTATGGGTGCAGTTATTT
GGTGTATTTATTTATGATTAGGATTGTCTAGGGGTTGCTTTGNNNTGACC
CNTGGGGATGAGGTCNGACNTCTCTNTGTTGATACNTATTACTTGAAGCA
GGGGGGGGGGTGGTTTTTCTTCTTCTTCTCTCCTTTTTCTCTTTCCTCTT
ATTTTTTCTTGTCCTCTTCCTTTTTTACTTTCTTCTCTTTCTATCTTATA
TTCATTCCTATTCTTTTTTCTTGTTCTTCTCTTTTTTACTCTATAATTCA
TACATTTATTCATTCTTTTCTTTTTCTCTTTCTTTATATTCCTTTCACAG
CAATTCATATATTAACTCATATCTTTGTTATCCTTCCCCTCTCTCTTCTC
TATTATTACTCTCTTATTCTTTATTCACAACCATCTTTTCTTTTTTTATC
TATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_e18.b1 MSMg01no440_e18.b1 CHROMAT_FILE:
MSMg01no440_e18.b1 PHD_FILE: MSMg01no440_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:42 2005
         (481 letters)



>mm_chr1_39920034_39920914
          Length = 881

 Score =  884 bits (457), Expect = 0.0
 Identities = 475/481 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagctgtatatacctgaacaatcaccatcctagtcaaaatactccagttacccagcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagctgtatatacctgaacaatcaccatcctagtcaaaatactccagttacccagcaagt 260

                                                                       
Query: 61  tccctcctccagcctcacacccgaccaccaagccagcctcgatatcagacactggatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctcctccagcctcacacccgaccaccaagccagcctcgatatcagacactggatgct 320

                                                                       
Query: 121 actttgttgcagcgtgctagtgaggaccccacctaggcgagggtcttaccactgctcttt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttgttgaagcgtgctagtgaggaccccacctaggcgagggtcttaccactgctcttt 380

                                                                       
Query: 181 ccagccaggtgactttttttttttttaatatggacgactttctcatacaggaaccagacc 240
           ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 381 ccagccaggcgacttttttttttttaaatatggatgactttctcatacaggaaccagacc 440

                                                                       
Query: 241 tggagttccagcctttcccaggctgtaggtcatgacgcctacaaagtctttatgtttact 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tggagttccagcctttcccaggctgtaggtcatgacacctacaaagtctttatgtttact 500

                                                                       
Query: 301 ccttctacaggaagaacacctgcagaacttatacgcacctcctcatatttgtagagcatc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttctacaggaagaacacctgcaggacttatacgcacctcctcatatttgtagagcatc 560

                                                                       
Query: 361 atggtgaacttggagaggggatctgcaaagcttttggaaatactattttacacttgggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggtgaacttggagaggggatctgcaaagcttttggaaatactattttacacttgggaa 620

                                                                       
Query: 421 cacgtgggagtttctaccgacttccatcttgcccaccctacttcctcctaagtaaggtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacgtgggagtttctaccgacttccatcttgcccaccctacttcctcctaagtaaggtta 680

            
Query: 481 c 481
           |
Sbjct: 681 c 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_e18.g1 MSMg01no440_e18.g1 CHROMAT_FILE:
MSMg01no440_e18.g1 PHD_FILE: MSMg01no440_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:42 2005
         (308 letters)



>mm_chr1_40092540_40093247
          Length = 708

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataagtgcaggaaatgtatcagagactgactgtctcatataccaacagctaccaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aataagtgcaggaaatgtatcagagactgactgtctcatataccaacagctaccaaaaac 445

                                                                       
Query: 61  aagattctatggaccaacacttaaaatatatgtgcacgaatcatgcttatcgtcaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagattctatggaccaacacttaaaatatatgtgcacgaatcatgcttatcgtcaacaaa 385

                                                                       
Query: 121 gggatttatcagccacatacaagatgctgtactcacctagatcgtgattcacatacatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggatttatcagccacatacaagatgctgtactcacctagatcgtgattcacatacatcg 325

                                                                       
Query: 181 aaaacgaaacacacacaaacactcctaagaacacatcgcttgatgaaatctttacttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaacgaaacacacacaaacactcctaagaacacatcgcttgatgaaatctttacttttg 265

                                                                       
Query: 241 ttaggtatgggtgcagttatttggtgtatttatttatgattaggattgtctaggggttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaggtatgggtgcagttatttggtgtatttatttatgattaggattgtctaggggttgc 205

               
Query: 301 tttg 304
           ||||
Sbjct: 204 tttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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