Query= MSMg01no440_f20.b1 MSMg01no440_f20.b1 CHROMAT_FILE:
MSMg01no440_f20.b1 PHD_FILE: MSMg01no440_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:47 2005
(401 letters)
>mm_chr1_167104472_167105273
Length = 802
Score = 681 bits (352), Expect = 0.0
Identities = 368/375 (98%), Gaps = 4/375 (1%)
Strand = Plus / Minus
Query: 28 atgacacatgctctgtactcagaacaatggcactacatgtctagagtgcctgcctagcat 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atgacacatgctctgtactcagaacaatggcactacatgtctagagtgcctgcctagcat 743
Query: 88 ggagcctgtggttcagtccctggaaatgcatacactgggcatggtggtgcatgccaatat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggagcctgtggttcagtccctggaaatgcatacactgggcatggtggtgcatgccaatat 683
Query: 148 cccagcacttgggaggtagagagaggcaggaggacctagagtatattggaccctaacttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 682 cccagcacttgggaggtagagagaggcaggaggacctagagtatattggaccctatcttt 623
Query: 208 aaaataataataataataataatcaaagaccaagtctggtgtttggacccttgcacatgg 267
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 622 aaaataataataataataat---caaagaccaagtctggtgtttggacccatgcacatgg 566
Query: 268 ctccatctgttaaatgttcaaaaaaaatgtttttttt-ctggccttttcattgtctttgc 326
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 ctccatctgttaaatgttcaaaaaaaatgtttttttttctggccttttcattgtctttgc 506
Query: 327 tttaccttgaataaggaaggcaaggnaaacaaagcaagcctccctggactccgtcctttg 386
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaccttgaataaggaaggcaaggtaaacaaagcaagcctccctggactccgtcctttg 446
Query: 387 taattctgactgtga 401
|||||||||||||||
Sbjct: 445 taattctgactgtga 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space: 310856
Effective search space used: 310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_f20.g1 MSMg01no440_f20.g1 CHROMAT_FILE:
MSMg01no440_f20.g1 PHD_FILE: MSMg01no440_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:47 2005
(404 letters)
>mm_chr1_166915941_166916744
Length = 804
Score = 719 bits (372), Expect = 0.0
Identities = 396/404 (98%)
Strand = Plus / Plus
Query: 1 actcggacaaccggatccttctacggcaaagcttttattgcttcaacataaggaagaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcggacaaccggatccttctacggcaaagcttttattgcttcaacataaggaagaccc 260
Query: 61 caaacctggaaaatggtgctgcttagatagcccgcagcgtgacgtttcagcacctgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaacctggaaaatggtgctgcttagatagcccgcagcgtgacgtttcagcacctgatgt 320
Query: 121 ggtgtgacagcacagcacctgattagttgctcacccatcaccccattactacgccccgat 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgtgacagcacagcacctgattagttgctcacccatcaccccattactacgccccgat 380
Query: 181 atgggcagtgactgggtgtggatttactcttgcacttgcgcataagacttgttttctagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 atgggcagtgactgggtgtggatttactcttgcacttgcgcataagacttgtttactagt 440
Query: 241 taggcgcagtgtaagccagcgccatcttataatggcgattgctcatggcatggctctcca 300
||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 441 taggcgcagtggaagccagcgccatcttataatggcgattgctcacggcacggctctcca 500
Query: 301 catctataaaggcattttcagagagatttagctgaagaagaaagacctaccatgagtgta 360
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 501 catctataaaggcattttcagagagatttagctgaagaaggaagacctacaatgagtgtc 560
Query: 361 ggcagcagcatcccattggctggaatttcagttgaagaaataag 404
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcagcagcatcccattggctggaatttcagttgaagaaataag 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
