BAC Information

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BAC

Clone NameMSMg01-440H03
Chromosome1 (Build37)
Map Location 172,349,963 - 172,350,496
singlet/doubletsinglet
Overlap geneNos1ap
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440H03.T7 (MSMg01no440_h03.b1)MSMg01-440H03.TJ (MSMg01no440_h03.g1)
ACCAG530560AG530561
length812758
length of high quality
(start - end)		209 (52 - 260)534 (80 - 613)
definitionCHROMAT_FILE: MSMg01no440_h03.b1 PHD_FILE: MSMg01no440_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:54 2005CHROMAT_FILE: MSMg01no440_h03.g1 PHD_FILE: MSMg01no440_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAAACCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTATGGTACCTATGGGAAACCACTGGTCCCAAGGAATT
AGGGTCAGGGAAGTCTCCATGAAGAAAGAGAGAGAAGAGAGGAGGAAGTA
AAAGAAAGAGAAAAAGAGAGAAAGAGAGAGAGAATGGGCATGCATGTGCA
GAGATAGAGACAGAGAAGAAGAGAGAAAGAGGGGGGGAGAGAGAGGGAGG
GGAGAAGATTTTTTCCTTTTTCTTTTCCCTTCCGTTTTCTCTTCCCTTTC
TCCGCCGTTTTTCCTTCTTGCCCTTTTTTTTTTTTGCCTGCCCCCCTTCT
TCTCTGCTTTTTTGTTTCTTTCCCCCCCCCTTTTTTTTTGCCACTTTCTC
TCCTCTCTTCTCTTGTTTTTCCCCCCTTTCGTTCTTTTTATTTATTTTTT
TTTCGTCTCTTCTCTCTCTTCTTCTTTCTCTATCCTCTCACTCTCTCCTT
CCTAGCTATTCCTCCTTCCTCGCTCCAACTTTTTGACTTCTCCTTTTCTT
TTCTTCCCTTCCCTTCTTCTTTTTTCCCCCCCCCCTTTCTTTACAATCTC
TTTTTTTCTCTTCTTTTTTATCCCTTTTACACTTTTTCGTCGCTGTTCCT
ATTTTTTTTTATACTGTTTTCTTTTCATTGTTTTCCAACTTTTTTTTTCT
TTTTTTTTTCCATTTTCTTCCTCCCTCTTTGTTTCTTCCTATCGATTCAC
TCTTATTTCTCCCACCTCCTTCCATCTCTTCTTCAACCACTTTCCGCTCC
TTTCTTTCCTTC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTCTTTGGCCATCTGGTTT
ACCTACTAAGCTTGACTGCCCCTGTCTTCTGTAGTTTGTCTTCTGAATTG
AATTTAATCTTTTAATGGATTTAACTCCCCTACCGAGCTCTTTGTAAGCA
TCCTAGCTGCTCATGAGTCCTTGAGAATTCCAGGTGTTTGCCAAAACTAC
ATTGGTTGTGACTCTGATTTAATGAACTATTTCCCCTGTAAATAAACCGT
CCTTGAGCCTCAGCATGACTCATGTTCCATGGACACATCCGCTCTTCCTT
CTAATTTACTTGCCTTCTTCCTTTTTGAGATGCACATTGTTGCTTCCCTT
CTTATAAACACACCCATGGATGTGCACATTCAAATTCAAATGTATGCCTT
GATGGAGTAGCCAGGTTTCTTGCCCCTTAAAAATGGAGCAGTTGGGAGAA
GAGAGATGGTTTGATTCCCTGCACCCCTGCGACTAACAACAGTCTGTAAT
TCCAATTCTAGGAGATTTGATCTGATGCCTCTTCTGGTTTCTGTAGGCTC
CTGCACACATATGATGTACATCTATATACTCAGGCTCTCCTTTTAAATAT
TAATAAAATAAAAGATATTCCTTAAAAAAAAATGGTGTGGGTTCATGAAA
CCAAAGTCCTGGAATTGTTATGGTCCCCTTATGAATTATATCTGAAACCT
TGAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_h03.g1 MSMg01no440_h03.g1 CHROMAT_FILE:
MSMg01no440_h03.g1 PHD_FILE: MSMg01no440_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:54 2005
         (534 letters)



>mm_chr1_172349869_172350802
          Length = 934

 Score = 1033 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctctttggccatctggtttacctactaagcttgactgcccctgtcttctgtagtttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgctctttggccatctggtttacctactaagcttgactgcccctgtcttctgtagtttgt 569

                                                                       
Query: 61  cttctgaattgaatttaatcttttaatggatttaactcccctaccgagctctttgtaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttctgaattgaatttaatcttttaatggatttaactcccctaccgagctctttgtaagc 509

                                                                       
Query: 121 atcctagctgctcatgagtccttgagaattccaggtgtttgccaaaactacattggttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atcctagctgctcatgagtccttgagaattccaggtgtttgccaaaactacattggttgt 449

                                                                       
Query: 181 gactctgatttaatgaactatttcccctgtaaataaaccgtccttgagcctcagcatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gactctgatttaatgaactatttcccctgtaaataaaccgtccttgagcctcagcatgac 389

                                                                       
Query: 241 tcatgttccatggacacatccgctcttccttctaatttacttgccttcttcctttttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcatgttccatggacacatccgctcttccttctaatttacttgccttcttcctttttgag 329

                                                                       
Query: 301 atgcacattgttgcttcccttcttataaacacacccatggatgtgcacattcaaattcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atgcacattgttgcttcccttcttataaacacacccatggatgtgcacattcaaattcaa 269

                                                                       
Query: 361 atgtatgccttgatggagtagccaggtttcttgccccttaaaaatggagcagttgggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgtatgccttgatggagtagccaggtttcttgccccttaaaaatggagcagttgggaga 209

                                                                       
Query: 421 agagagatggtttgattccctgcacccctgcgactaacaacagtctgtaattccaattct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 agagagatggtttgattccctgcacccctgcgactaacaacagtctgtaattccaattct 149

                                                                 
Query: 481 aggagatttgatctgatgcctcttctggtttctgtaggctcctgcacacatatg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aggagatttgatctgatgcctcttctggtttctgtaggctcctgcacacatatg 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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