NGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCC
GCGGAATTCCTGAACTTTCCAAGTCTTATATCGTGAAGGGATGTTGGAGT
TTGTTAAATGCTTTCTCAGCATCTAAGGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATAATGTGGATTACTTTGATGGATTTCTGTATATTAA
ACCATCCCTGCATCCCTGGGCTGAACCCTACTTGGTCATGATGGATAATT
GTTTTGATGTGTTCTTAGATTCTGTTTGTGAGGATTTTATTGAGTAATTT
TGCTTCAATATTTATAAAGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTG
GGTCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAG
TTGAGTAGAGTACTTTCTGTTTCTATTTTGTGGAATATTTTGAGGAGAAT
TGGTATTACGTCTTCTTTAATAGTCTGATAGAACTCTTCACTAAACCCAT
CTGTTCCTGTGATTTTTTGCTTGTTAGACTATTAATGACTGGGTCTATTT
TCTTCAATGCTAACCCCACTGTTTACATCCTTAATTTTGATCTTGATTAA
TTTTGCCATCTTTGAATTTTTTCAATAATTTTCACCATCTTTTTCCTACT
TTTTCTCACCCTTGTTTTTTATTTTTTCCACCTTTTTATCACATTCTTTA
TACTTTAATTTCTTATTCTCTTTTTTTTTTTTTATTCCTTTCTTCTACTC
TCTTATCCTCCTCACTTCCTCTTTTATTTTG

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCTATTTGAAGGTTAA
GTCACTTTCAACTTCATTTCAGAGTGTGCTTAATCTAAAAGTTAATCAAT
CTCAACTTAGAGATTTAACAAAACCATAGAAGAATAGCTCTGAGTCCAAC
CTGCATTTCCCTAAAGACTCTCAGGGAGAGGAATGGGGTTGATCTCTTTA
TTGAATCCAGGACAGACAGGCAGCGATTCCTCTGATGGTGCAAGCCTGCT
AGCACACCGGGAGGCAAGGTCTCCAGCTGTGCAAGTGTAAAAGCAGGTAA
CTTTGGTCTTCTTATTTCCTAGCGATCAATCCTTCCAGAAATCATTGGAA
CTACATCTGTTTAGTATGCCATCTGATGTCCTTCTTGTTCCTTTGTCTCC
TGGTGGTGAGATGTTTCCAAGGATTTCACTAAAATTCTACAGACCTCAGG
TCTCATAATCTTCCCTTATCTGCTTCTATCTATAAATATATGGAGGAAAA
CAAAAGAAAGAGGAAAAATTGAGGAAGAAAACTAGAGGAAGAAAGAAAAA
AAGAGAAGAAACTTGTCTCTTGGATCATATGAAGAAAAATCATATCCTTG
ATCTTTACAAGGTTGAAGCCAAAACAAGGGTGGTGAATCCCATGGGGGAA
CCCCTGTTTAGAAGGACCCTGCTCACACATGTCCTGGATGGTTGGCCCGC
CCTATTACATAACCATTTTTGTTTN

Query= MSMg01no440_h05.g1 MSMg01no440_h05.g1 CHROMAT_FILE:
MSMg01no440_h05.g1 PHD_FILE: MSMg01no440_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:54 2005
         (496 letters)



>mm_chr1_13920763_13921659
          Length = 897

 Score =  899 bits (465), Expect = 0.0
 Identities = 489/497 (98%), Gaps = 1/497 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcctatttgaaggttaagtcactttcaacttcatttcagagtgtgcttaatctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cattcctatttgaaggttaagtcactttcaacttcatttcagagtgtgcttaatctaaaa 638

                                                                       
Query: 61  gttaatcaatctcaacttagagatttaacaaaaccatagaagaatagctctgagtccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gttaatcaatctcaacttagagatttaacaaaaccatagaagaatagctctgagtccaac 578

                                                                       
Query: 121 ctgcatttccctaaagactctcagggagaggaatggggttgatctctttattgaatccag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 577 ctgcatttccctaaagactctcagggagaggaacggggttgatctctttattgaatccag 518

                                                                       
Query: 181 gacagacaggcagcgattcctctgatggtgcaagcctgctagcacaccgggaggcaaggt 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 517 gacagacaggcagcgattcctctgacggtgcaagcctgctagcacaccgggaggcaaggt 458

                                                                       
Query: 241 ctccagctgtgcaagtgtaaaagcaggtaactttggtcttcttatttcctagcgatcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctccagctgtgcaagtgtaaaagcaggtaactttggtcttcttatttcctagcgatcaat 398

                                                                       
Query: 301 ccttccagaaatcattggaactacatctgtttagtatgccatctgatgtccttcttgttc 360
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 397 ccttccaggaatcattggaactacatttgtttagtatgccatctgatgtccttcttgttc 338

                                                                       
Query: 361 ctttgtctcctggtggtgagatgtttccaaggatttcactaaaattctacagacctcagg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 337 ctttgtctcctggtggtgagatgtttccaaggatttcactaaaattctactgacctcagg 278

                                                                       
Query: 421 tctcataatcttcccttatctgcttctatctataaatatatggaggaaaacaaaagaaag 480
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tctcttaatcctcccttatctgcttctatctataaatatatggaggaaaacaaaagaaag 218

                            
Query: 481 agg-aaaaattgaggaa 496
           ||| |||||||||||||
Sbjct: 217 aggaaaaaattgaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space:   431082
Effective search space used:   431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)