Query= MSMg01no440_i03.b1 MSMg01no440_i03.b1 CHROMAT_FILE:
MSMg01no440_i03.b1 PHD_FILE: MSMg01no440_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:59 2005
(249 letters)
>mm_chr1_37458882_37459530
Length = 649
Score = 458 bits (237), Expect = e-133
Identities = 246/249 (98%)
Strand = Plus / Plus
Query: 1 caagcccccagtgaataggaacgtgacgttgggtctaacttcaggtacttagttcctgta 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 caagcccccagtgaataggaacgtgacgttgggtctaacttcagctacttagttcctgta 260
Query: 61 agtcatgtgggctaagcccagcacccacctggctgagtccgaggataatggcacagacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcatgtgggctaagcccagcacccacctggctgagtccgaggataatggcacagacag 320
Query: 121 aggtggccctctgtcccatgtgaagaactgaaattcacaaacagtaggccctcctgggca 180
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtggccctctgtcccatgtgaggaactgaaattcacaaacagtaggccctcctgggca 380
Query: 181 gccgcagtggcctggcaagcagccccggcagacaccgtgatcatcagtaagtgcttgcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccgcagtggcctggcaagcagccccggcagacaccgtgatcatcagtaagtgcttgcgg 440
Query: 241 cttgcagtg 249
|||||||||
Sbjct: 441 cttgcagtg 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no440_i03.g1 MSMg01no440_i03.g1 CHROMAT_FILE:
MSMg01no440_i03.g1 PHD_FILE: MSMg01no440_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:59 2005
(499 letters)
>mm_chr1_37589314_37590218
Length = 905
Score = 861 bits (445), Expect = 0.0
Identities = 489/507 (96%), Gaps = 10/507 (1%)
Strand = Plus / Minus
Query: 1 caggttcgtgttcatggaaatggaaaggttgggaaagttgtaggcgggtgctgggagaat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 caggttcgtgttcgtggaaatggaaaggttgggaaagttgtaggcgggtgctgggagaat 646
Query: 61 gggacgagaatgattctgagtgttatgcgctgctgtggatcgggtaccgtggaactttct 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gggacgagaatgattccgagtgttatgcgctgctgtggatcgggtaccgtggaactttct 586
Query: 121 ccacggtcaaacacaatacagaaacaggaaaaccaagtaagtatcgcagatccctgcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ccacggtcaaacacaatacagaaacaggaaaaccaagtaagtatcgcagatccctgcacc 526
Query: 181 tggccggtctgtgtccgcacgcctgactcagggcc----acatgctcgtcacgtccctaa 236
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 525 tggccggtctgtgtccgcacgcctgactcagggccacatacatgctcatcacgtccctaa 466
Query: 237 gacacagcgcctgttttatgcttgcttcagcaaaac---tgtttgggggaactttaaaac 293
|||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 465 gacacagcgcctgtgcaatgcttgcttcagc-aaacatgtgttt-ggggaactttaaaac 408
Query: 294 agccttattgagttataatttacatactaaacaattcaaccattgaacatactgacgaat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agccttattgagttataatttacatactaaacaattcaaccattgaacatactgacgaat 348
Query: 354 aataattcact-tgggggggggtaggatgcctacagtaaaaatggttaccctgctgaggt 412
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aataattcactgggggggggggtaggatgcctacagtaaaaatggttaccctgctgaggt 288
Query: 413 ggggatttagccgagtgatggaggacttgctgaatagtcatgaggtcactggtgtgagtc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggggatttagccgagtgatggaggacttgctgaatagtcatgaggtcactggtgtgagtc 228
Query: 473 ctgtacctattagttatcacagcatct 499
| |||||||||||||||||||||||||
Sbjct: 227 ccgtacctattagttatcacagcatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 905
Length adjustment: 10
Effective length of query: 489
Effective length of database: 895
Effective search space: 437655
Effective search space used: 437655
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
