Query= MSMg01no440_n15.b1 MSMg01no440_n15.b1 CHROMAT_FILE:
MSMg01no440_n15.b1 PHD_FILE: MSMg01no440_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:26 2005
(493 letters)
>mm_chr1_176197927_176198819
Length = 893
Score = 793 bits (410), Expect = 0.0
Identities = 470/490 (95%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 5 gaattcctagggttctttctcagcacagggctcttaatgtagtgacttttgagaataggc 64
||||||| || |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 205 gaattccaagtgttctttctcagcacagggctcgtaatgtagtgacctttgagaataggc 264
Query: 65 gtgactaatcttatccttcaggtgccgcatctgaagggtcatttcaaatgtctgtttagc 124
||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 265 gtgactaatcttatctttcaggtaccccatctgaaaggtcatttcaaatgtctgtttagc 324
Query: 125 ttttgaaaatcaatggacgtgatgattgtcattga-tgttatagataattgcctctgagt 183
|||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 325 ttttgaaaatcaatggacttgatgattgtcatt-agtgttatagataattggctctgagt 383
Query: 184 gcttgctatgggctgtgttactgtataaatgcatgatgcatttatccacaggaaccctat 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcttgctacgggctgtgttactgtataaatgcatgatgcatttatccacaggaaccctat 443
Query: 244 gtagtaggtcctcgtgcacacccttttactaataggcaacaccagagtgccaataattat 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 gtagtaggtcctcctgcacacccttttactaataggcaacaccagagtgccaataatcat 503
Query: 304 ccaaggttacgcagctgggaagtaatggatagtctactaaatcccagtactgtggtctct 363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaaggttacacagctgggaagtaatggatagtctactaaatcccagtactgtggtctct 563
Query: 364 gagcccgagctaacaggtcatgatgccttcttctacaccagcagcgctttacaaactgca 423
|||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 564 gagcccaagctaacaggacatgatgccttctgctacaacagcagcgctttacaaactgca 623
Query: 424 gcagtgctttatgtaaatgataatactgccctcatgcagcaccttactgatccagaggga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcagtgctttatgtaaatgataatactgccctcatgcagcaccttactgatccagaggga 683
Query: 484 aaatcaccag 493
||||||||||
Sbjct: 684 aaatcaccag 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_n15.g1 MSMg01no440_n15.g1 CHROMAT_FILE:
MSMg01no440_n15.g1 PHD_FILE: MSMg01no440_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:26 2005
(428 letters)
>mm_chr1_175082407_175083234
Length = 828
Score = 803 bits (415), Expect = 0.0
Identities = 424/429 (98%), Gaps = 4/429 (0%)
Strand = Plus / Plus
Query: 1 catttctaaaacagtgattgacacaagaactttgctcaaaattttagctatgatatattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttctaaaacagtgattgacacaagaactttgctcaaaattttagctatgatatattg 260
Query: 61 tagagaaactttaaaaaatgattccatcatgtttattgagataaattcactctgattcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagagaaactttaaaaaatgattccatcatgtttattgagataaattcactctgattcaa 320
Query: 121 tttagttgtcaggaacacagtattttctccttaaaacttgttttaaaaaaactgattttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagttgtcaggaacacagtattttctccttaaaacttgttttaaaaaaactgattttt 380
Query: 181 ttcattagcatttagaagtctttattttttctttttctaaagacttttcataggaaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcattagcatttagaagtctttattttttctttttctaaagacttttcataggaaattt 440
Query: 241 tattttctctgcagtctgatgcctctatcctccagtaagtcatctttaaccatgatgctc 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttctctgcagtctgatgcttctatcctccagtaagtcatctttaaccatgatgctc 500
Query: 301 tgctgaaagtcactgaaggtgtgcctataaccctataattttccagtgtttaagaaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgaaagtcactgaaggtgtgcctataaccctataattttccagtgtttaagaaagaa 560
Query: 361 agaaagaacacatattgcagtgtgagtgtgagtgagtgagtg----tgtgtgagtgtgtg 416
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 agaaagaacacatattgcagtgtgagtgtgagtgagtgagtgagtgtgtgtgagtgtgtg 620
Query: 417 tgtgtgtgt 425
|||||||||
Sbjct: 621 tgtgtgtgt 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
