BAC Information

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BAC

Clone NameMSMg01-440O09
Chromosome1 (Build37)
Map Location 113,875,530 - 113,875,988
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247
Downstream geneEG626897, LOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440O09.T7 (MSMg01no440_o09.b1)MSMg01-440O09.TJ (MSMg01no440_o09.g1)
ACCAG530906AG530907
length754742
length of high quality
(start - end)
468 (53 - 520)458 (81 - 538)
definitionCHROMAT_FILE: MSMg01no440_o09.b1 PHD_FILE: MSMg01no440_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:30 2005CHROMAT_FILE: MSMg01no440_o09.g1 PHD_FILE: MSMg01no440_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGATCTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTATCTCTTCGATACTTTTAGCATGAAGGGGCATTAT
ATTTTGTTAAAGTATTTTTCAGCATCTAATGAGATATTTATGGGGTTGTT
TCCTTTGACTATGCTTATATATTGGGCTACTTTGATGGATTTCAATACAT
AGTACCATTCCTGCATTCTTGGGATAAAGCTTACTTGATCATCATGAATG
ATCATTTTGATGTGTTCTTAGATTCAGTGTGCAACAGTTTTATTGAGTAT
TTTTGCATCAATATTCCTGAAGAAAATTGGTCTGAAGATCTCTCTCTCTC
TCTCTCTCTCTGGTGGTGGTGGGAGATCTTTAGCAACCTTTTATATCTGA
TAGAGAGCTAACATACAACATATACAAATAACTCAAGAAGTTATACTCCA
GAAAACCAAAGAACCCTATTAAAAAGGAGACACAAAGCTAAATTGAGAAT
TCTCAAATGAGAAATCTCAAATAGCTGAGAAGCACTTAAAGAAATGTTCA
AAGACCTTAGTCATCAGAGAAATGCAAATCCAAATTATCCTGAGATTCTA
CCTTACCCCAGTCCGAATGGTCTAGATCCAAACCTCCTTTGATAGCACAA
GCTTGCCCGGTTTTGGCTAAAGTGCAACCCTCCCTCCATTTTCGGATGAC
TTGCCAGCTTTTATCCCCTCTCTTGTATATCTCCTTTTTCTCCATTTTTT
CTTT
NNNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGACTCCTATAATTT
TTAGTTCTTTCCAACTCCTTTTCTATGAAAATCCATGAGTCTTGTTGAGG
GTTGTATACTGAAATTTACACTAAATATTCAGGATGAACTTGAGTGGTTT
TCAGGAAGAACATGCTCAGGGAAAATTTATAAAACTTTCCCCTATGTGCT
AAGTGTGTGTTAAAATAAAAGTTTGTGCAAAGTTTTTTGTTGTTGTTTTG
TTTCAGACAAAATATTCCAACCACAAAACTACAAATTATAAGACAGTCTA
GTTTTTAGTGTTTGGGTAGGCATGAAGTATATTTGTTCAAGAAGGAGAGA
GCTCATCTTTATTAGAAAACCTTGGTAATTTAGACTTGGCAGGAAGCCAT
ATGTTCATCGCTCTTAAATCTAATATGTATGTGTATGTGTATATATATAT
ATATATATATATATATATATATATATATATATATACACATATATATATAT
ATATATATATATATATATATATATTCTATTTATTTTAATAAAAAAATATT
TTTTTTATTAATTTATTTTTTTTTTTTTTTTATTATATTTATAATAAAAA
AAAAAAAATAAAANANNNTTTTTTTTTTTTTATTTTTGTNAGGGGTGTTN
NTTTTTTAAAAAAAAAAAAAAAATTATTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_o09.g1 MSMg01no440_o09.g1 CHROMAT_FILE:
MSMg01no440_o09.g1 PHD_FILE: MSMg01no440_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:30 2005
         (458 letters)



>mm_chr1_113875391_113876254
          Length = 864

 Score =  837 bits (433), Expect = 0.0
 Identities = 451/461 (97%), Gaps = 8/461 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctgactcctataatttttagttctttccaactccttttctatgaaaatccatgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcacctgactcctataatttttagttctttccaactccttttctatgaaaatccatgagt 539

                                                                       
Query: 61  cttgttgagggttgtatactgaaatttacactaaatattcaggatgaacttgagtggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttgttgagggttgtatactgaaatttacactaaatattcaggatgaacttgagtggttt 479

                                                                       
Query: 121 tcaggaagaacatgctcagggaaaatttataaaactttcccctatgtgctaagtgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcaggaagaacatgctcagggaaaatttataaaactttcccctatgtgctaagtgtgtgt 419

                                                                       
Query: 181 taaaataaaagtttgtgcaaagtttt------ttgttgttgttttgtttcagacaaaata 234
           ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||
Sbjct: 418 taaaataaaagtttgtgcaaagttttttgttgttgttgttgttttgtttcagacaaaata 359

                                                                       
Query: 235 ttccaaccacaaaactacaaattataagacagtctagtttttagtgtttgggtaggcatg 294
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttccaaccacaaaacaacaaattataagacagtctagtttttagtgtttgggtaggcatg 299

                                                                       
Query: 295 aagtatatttgttcaagaaggagagagctcatctttattagaaaaccttggtaatttaga 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aagtatatttgttcaagaaggagagagctcatctttattagaaaaccttggtaatttaga 239

                                                                       
Query: 355 cttggcaggaagccatatgttcatcgctcttaaatctaatatgtatgtgtatgtgtatat 414
           |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||
Sbjct: 238 cttggcaggaagccatatgttcatcgctcttaaatctaatatgta--tgtatgtatatat 181

                                                    
Query: 415 atatatatatatatatatatatatatatatatatatatata 455
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atatatatatatatatatatatatatatatatatatatata 140



 Score = 93.5 bits (48), Expect = 3e-23
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                           
Query: 410 tatatatatatatatatatatatatatatatatatatatatatataca 457
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tatatatatatatatatatatatatatatatatatatatatatataca 189



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 410 tatatatatatatatatatatatatatatatatatatatatatata 455
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tatatatatatatatatatatatatatatatatatatatatatata 181



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 410 tatatatatatatatatatatatatatatatatatatatatatata 455
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tatatatatatatatatatatatatatatatatatatatatatata 183



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 410 tatatatatatatatatatatatatatatatatatatatatatata 455
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tatatatatatatatatatatatatatatatatatatatatatata 185



 Score = 85.8 bits (44), Expect = 6e-21
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 410 tatatatatatatatatatatatatatatatatatatatatatataca 457
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 146 tatatatatatatatatatatatatatatatatatatatatacataca 193



 Score = 78.1 bits (40), Expect = 1e-18
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 410 tatatatatatatatatatatatatatatatatatatatatatataca 457
           |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 150 tatatatatatatatatatatatatatatatatatatacatacataca 197



 Score = 64.5 bits (33), Expect = 1e-14
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 410 tatatatatatatatatatatatatatatatatatatatatatat 454
           |||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 156 tatatatatatatatatatatatatatatatacatacatacatat 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 11
Length of query: 458
Length of database: 864
Length adjustment: 10
Effective length of query: 448
Effective length of database: 854
Effective search space:   382592
Effective search space used:   382592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)