Query= MSMg01no440_o10.b1 MSMg01no440_o10.b1 CHROMAT_FILE:
MSMg01no440_o10.b1 PHD_FILE: MSMg01no440_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:30 2005
(475 letters)
>mm_chr1_183445878_183446752
Length = 875
Score = 781 bits (404), Expect = 0.0
Identities = 455/476 (95%), Gaps = 11/476 (2%)
Strand = Plus / Plus
Query: 1 attggcttattcaaacattaacagaaagattacatatcagcaaaagggcatcagaacttt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 210 attggcttattcaaacattaacagaaagattacatgtcagcaaaagggcatcagaacttt 269
Query: 61 gttcctgtgggctgggggcttatctttgtacacatagcaaccagttgatgtatgacttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttcctgtgggctgggggcttatctttgtacacatagcaaccagttgatgtatgactt-- 327
Query: 121 ccctgcagtaaac-agaagacagtagacagaagggaggttccggccaggtggtgttgact 179
|| || | || | ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 328 ---ggc-gt---cgag-gggcagtagacagaggggaggttccggccaggtggtgttgact 379
Query: 180 cagacaagatagccctgcttgtccttgttttctttttcatctttacagtcaagctgttct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagacaagatagccctgcttgtccttgttttctttttcatctttacagtcaagctgttct 439
Query: 240 taggaatgtcttatcaacagccctgcctgttctgctttgttctcggccccaggccccggg 299
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 taggaatgtcttaacaacagccctgcctgttctgctttgttctcagccccaggccccggg 499
Query: 300 ctcatagacaactcttttacatgaatcacaagtcacaaaatctcattttccttcaccatc 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 ctcatagacaactcttttacatgaatcacaagttacaaaatctcattttccttcaccatc 559
Query: 360 agaatgagagctttcaatggcagttcttttgtctcaatcaatttctctgcatgtttcaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaatgagagctttcaatggcagttcttttgtctcaatcaatttctctgcatgtttcaga 619
Query: 420 ttgtttagaagggggtggggggaacaattcattgcttgggagataacacacttcac 475
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtttagaaaggggttgggggaacaattcattgcttgggagataacacacttcac 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_o10.g1 MSMg01no440_o10.g1 CHROMAT_FILE:
MSMg01no440_o10.g1 PHD_FILE: MSMg01no440_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:30 2005
(500 letters)
>mm_chr1_183621476_183622375
Length = 900
Score = 913 bits (472), Expect = 0.0
Identities = 490/496 (98%)
Strand = Plus / Minus
Query: 1 attgacctccaaatgactcagacccagaagtactgagcccagggccttgtgcatgccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attgacctccaaatgactcagacccagaagtactgagcccagggccttgtgcatgccagg 437
Query: 61 caagtgctctaccactggcgccatgcctccagactttgttggagacgtgaatcttcctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caagtgctctaccactggcgccatgcctccagactttgttggagacgtgaatcttcctcc 377
Query: 121 ttctacttcctgaggagtgggtatggtaggtaccactaggcccagtcaacatgtgaccag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttctatttcctgaggagtgggtatggtaggtaccactaggcccagtcaacatgtgaccag 317
Query: 181 cttccttcatagaatgttttcaatattataggaatatactacatttttttttctacatgt 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 316 cttccttcatagaatgttttcaatattgtaggaatatactacatttttttttctacatgt 257
Query: 241 gtatcttactagaggcaatgggttggttccactttctgactatcatgtggaatggtatta 300
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtatcagacaagaggcaatgggttggttccactttctgactatcatgtggaatggtatta 197
Query: 301 tacgaatttcaatatcagtttgtgcttgggcatatgtttcattatctcatgcttacattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tacgaatttcaatatcagtttgtgcttgggcatatgtttcattatctcatgcttacattt 137
Query: 361 ttttgtgagctgaatttgtaggatcatagggcactacatttaatttgatattactgccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttttgtgagctgaatttgtaggatcatagggcactacatttaatttgatattactgccaa 77
Query: 421 ctgtttcttggctgctacttttgcatcctttgcttttaggatgctgctgtgggaagtaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 76 ctgtttcttggctgctacttttgcatcctttgcttttaggatgctgctgtggggagtaaa 17
Query: 481 tcactagattcttgtt 496
||||||||||||||||
Sbjct: 16 tcactagattcttgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
