BAC Information

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BAC

Clone NameMSMg01-441A02
Chromosome1 (Build37)
Map Location 51,714,915 - 51,715,103
singlet/doubletsinglet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441A02.T7 (MSMg01no441_a02.b1)MSMg01-441A02.TJ (MSMg01no441_a02.g1)
ACCAG530988AG530989
length7021,411
length of high quality
(start - end)
200 (44 - 243)---
definitionCHROMAT_FILE: MSMg01no441_a02.b1 PHD_FILE: MSMg01no441_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:38 2005CHROMAT_FILE: MSMg01no441_a02.g1 PHD_FILE: MSMg01no441_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCCACATGTGTTTCCGTGTGGGGAAGGGGAAGCATGTGTTGTGA
CATTTGCATCAGGTCAAAGGATGCTCTGCAAGCAAGTGTTATGGAGTTCA
CCCAAGATGCAAAACTGTATTTGAATAAGTCAGGTAGCAGCTGACATTGA
AGCACAGTACGGTGGAAAAGAAGCCAACGATACGGAGCCTAAGCTTTGGT
GNNNAGCTTTCTACATATATCTATCATTAGCGTTTTCATGGGTTTGAAAA
AATAATTAATTACCCCCTAAATTTTAAAAAAAGGCTAAATGGTNATTTTT
TCAAAAAAATTTGGTTATTTATAATGGAACAGGGAAAAAGGGAAGTTAAT
GAAGGAAAAAGAAGGTTTTGGGGGTTCCCCAAAAAGAAGGGAAAAGGGGG
GGAAAAAATGTTAAGGGCCCCAAAAAAGGGGTTTCCCCCCACCAAAANNT
TNNNNNGGGGGAGGAAAAACCCCCCCCAAAATCCCGGGGGAAAAGGGGAG
ATTTTTTTTTTTTATACCCCNCCCAATCTTTGTGGTNNTGTCCGGGTGGG
GAGAAAAAAAACACAAAAAAAAAAAAACACCCCCCCCCCTCTTTTTTTTT
TTTTTTTTGGGAGNNTAACAAAAAAAATAAACTCCTTATCTCTTTGTTGG
TT
TTCTCTTCTGATAAGCAGATTGTGCTCTTCTCGCTGTGTGTTCTGTGTGG
GGNTGTTGTCTACTTCAAGATAGGATAGGGTANGGGCGCTCGCNCTGTTT
CGGCTACTCTCTCCTCGGATACNANATAGAGAGTGTATATAGCAAGTTGT
GGCACAGGCGAGAGAATAAATAAGAGGAACTGATGTAGAGTAGCGAGGGC
GAGACGACGCCGCCGCTAGACCAGAGACGGAGNACAGGAGCCAGTAATGA
CAGACAGAGGCAGAGGCGGCGCGGCGGCCGCCACACCANANGATCAATAA
TTANAGTGTTAGTATATGTGTTGCTGATATAGGGAGAGGTCTGATTGATG
TTTCGCTCTCTATATCTGTCCCACCGACAATATTATTCCGCATGTGTGTT
CGGCGCCCACCGAGTAATAGTCACGGCGTCTCACTCTTTATATGCTCACA
GATCAACTCGCTACGACAGACAGCGGATGTGAGCATACAGTGCAGCACTC
ATTTGTCCGAACCCCTCGCGAAACATGAGAGTGAAACTAGGAGACGANCC
AGCTTGAGAACGAAGGCGCGACGAAGAAACAATAACTAAGTACAGATCAT
GTAGTGAATAGTATAAAATATCTTACCACCCGGCGACATTACTATATAAT
TATACCGAACGTAGCACCTACATGATATCTCGGTCCGCGTAGTTATGCAC
CGCTGAGACACAGGATGCGCGAGAACAATGGTGCGTAATAGGTCCCGCGG
CGTGTGATAGTGAACGGTATAACAACGACGGAGCGCATAGGCTGCGCGGC
GTATATGTTTATGCGCGCCGCGCCCACCACGTACCGCGCGTCTGTTGCGT
TCTGCTGCGCGTGCACGCGCGCAAAGATTGACAGTTGAACGAGCCATATA
GTCAGATGAGAGGATCAACGCTACAGCTTATCCGACCGCGGCGCGCATCG
CCCTCGCGCGACGATATTAATTAGGCATGAACGAACGTATATACGCCGGN
CGGCATGGCGCGACGGCGCTGTAGTATGGCGCACACGACGTATTAAATCC
GCGCGGCGTGAGGCTAGATAATACACGACACAATATGTGCGCACGAGCGC
GCGCTGACATAGCTATCATGTGAGTTATGTGCGCTGGGTAGTGACGGCGC
GAGTCGNCGTATGTGCGTGCCGGCCGGCTGCGCACGATACATTAACAATA
TATATGAGGATGGAGAACCACTAGTGGTACTAGTGCGTGCGCTGCACACA
CATATCGACAGCGAAGATAATTAATCACTCGCGGTGCACTACGCATGACT
ATATATATGTACCGCGGCGCGGATATCTCTACCTGTATGATTATTCTGAC
GTCGATGATTTCTACATTATATAGCGCACCACACGGTATATAATGCTCGT
GTGGACGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_a02.b1 MSMg01no441_a02.b1 CHROMAT_FILE:
MSMg01no441_a02.b1 PHD_FILE: MSMg01no441_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:38 2005
         (200 letters)



>mm_chr1_51714706_51715305
          Length = 600

 Score =  304 bits (157), Expect = 3e-87
 Identities = 181/189 (95%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattccacatgtgtttccgtgtggggaaggggaagcatgtgttgtgacatttgcatcag 69
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaattccacatgtggctccgtgtggggaaggggaagcatgtgttgtgacatttgcatcag 339

                                                                       
Query: 70  gtcaaaggatgctctgcaagcaagtgttatggagttcacccaagatgcaaaactgtattt 129
           ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 338 gtcaaaggatgatctgcaagcaagtgttatagcgttcacccaagatgcaaaactgtattt 279

                                                                       
Query: 130 gaataagtcaggtagcagctgacattgaagcacagtacggtggaaaagaagccaacgata 189
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 278 gaataagtcaggtagcagctgacattgaagcacagtatggcggaaaagaagccaacgata 219

                    
Query: 190 cggagccta 198
           | |||||||
Sbjct: 218 cagagccta 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)