Query= MSMg01no441_a06.b1 MSMg01no441_a06.b1 CHROMAT_FILE:
MSMg01no441_a06.b1 PHD_FILE: MSMg01no441_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:39 2005
(414 letters)
>mm_chr1_45897758_45898568
Length = 811
Score = 630 bits (326), Expect = 0.0
Identities = 397/430 (92%), Gaps = 24/430 (5%)
Strand = Plus / Plus
Query: 2 taaaaatattatattaaaaatagctattatattatactaaattataattataatgtatta 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 189 taaaaatattatattaaaaatagctattatattatactatattataattataatgtatta 248
Query: 62 tattttttcataaaatataaatatatccttatatcaataaaatgagctaaataatgatct 121
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tattttt-cataaaatataaatatatccttatatcaataaaatgagctaaataatgatct 307
Query: 122 tagtgttt-catactattctaatatggcaatc-------------ttatagaattcttcc 167
|||||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct: 308 tagtgtttacatactattctagtatggcaatcaattatattttacttatagaattcttcc 367
Query: 168 tctacattatc-aagtttccaactatattaaaaagactataataaaaatattagcatata 226
||||||||||| || ||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct: 368 tctacattatccaaatttgcaactatattaaaaa---tataataaaa-tattagcatata 423
Query: 227 tgtgcataatctaatgtgtttctct-gggacagatacactttcaaaattt-tccagttta 284
|||||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||
Sbjct: 424 tgtgcataatctaatgtgtttc-cttgggacagatacactttcaaa-tttatccagttta 481
Query: 285 aaaataatgtataattaactgattgaataaattctagcaaaggttgagagaaaactagag 344
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 482 aaaataatggataattaactgattgaataaattctggcaaaggttgggagaaaactagag 541
Query: 345 tgtgcaatataggaagaatctcttcctggcaagttaagctaggaaatcttgtgaacaaca 404
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 542 tgtgcaatataggaagaatctcttcctggcacgttaggctaggaaatcttgtgaacaaca 601
Query: 405 ttttttcctt 414
||||||||||
Sbjct: 602 ttttttcctt 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 811
Length adjustment: 9
Effective length of query: 405
Effective length of database: 802
Effective search space: 324810
Effective search space used: 324810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_a06.g1 MSMg01no441_a06.g1 CHROMAT_FILE:
MSMg01no441_a06.g1 PHD_FILE: MSMg01no441_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:39 2005
(304 letters)
>mm_chr1_46075448_46076150
Length = 703
Score = 557 bits (288), Expect = e-163
Identities = 300/304 (98%), Gaps = 1/304 (0%)
Strand = Plus / Minus
Query: 1 acatcacatgggctttgttcacgctgtagacagggcataaaagaatctattctcctccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acatcacatgggctttgttcacgctgtagacagggcataaaagaatctattctcctccta 444
Query: 61 cctatgaactggacttgggaataggagaacatcagatccctaggtctagtttatattccc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctatgaactggacttggg-ataggagaacatcagatccctaggtctagtttatattccc 385
Query: 121 agaatgtatcaaggaaatatttcaacaacagatttcctgttcttagaagccaaattaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaatgtatcaaggaaatatttcaacaacagatttcctgttcttagaagccaaattaaac 325
Query: 181 ctgtcagtccaacagtcttatcaaagatgatactctgggagtcacctaaaccaggacctt 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 ctgtcagttcaacagtcttatcaaagatgatactctgggagtcacctaaaccaggccctt 265
Query: 241 agctcttcctcctggtcatttcctctgtggtgttgaagaccagcagagagctaagcaagg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agctcttcctcctgatcatttcctctgtggtgttgaagaccagcagagagctaagcaagg 205
Query: 301 acct 304
||||
Sbjct: 204 acct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 703
Length adjustment: 9
Effective length of query: 295
Effective length of database: 694
Effective search space: 204730
Effective search space used: 204730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
