Query= MSMg01no441_g19.b1 MSMg01no441_g19.b1 CHROMAT_FILE:
MSMg01no441_g19.b1 PHD_FILE: MSMg01no441_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:12 2005
(486 letters)
>mm_chr1_85100731_85101616
Length = 886
Score = 424 bits (219), Expect = e-123
Identities = 256/273 (93%), Gaps = 9/273 (3%)
Strand = Plus / Plus
Query: 1 agaaagaaagaaagaaacaaaga----gagagagagagaga-----aaagaaagaaagaa 51
||||||||||||||||| ||||| |||||||||||||| | ||| ||| |||
Sbjct: 192 agaaagaaagaaagaaagaaagagagggagagagagagagagcgagagagagagagagag 251
Query: 52 agaaagaaagaaagaaaggaaggaagaaagaatcataaaatgttttactaaaaccaaaag 111
||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agagagagagaaaggaaggaaggaagaaagaatcataaaatgttttactaaaaccaaaag 311
Query: 112 ggcataaaaagaaaggaaagccaaaaacaaaaagagtaaaatgaaaatatttacaaacat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggcataaaaagaaaggaaagccaaaaacaaaaagagtaaaatgaaaatatttacaaacat 371
Query: 172 ggtaggtatttctctgtgtccataatgagtcaaaatgtggataatttaataatagcacaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggtaggtatttctctgtgtccataatgagtcaaaatgtggataatttaataatagcacaa 431
Query: 232 ttataaaacagagtacgtttaaaaactgtaact 264
|||||||||||||||||||||||||||||||||
Sbjct: 432 ttataaaacagagtacgtttaaaaactgtaact 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_g19.g1 MSMg01no441_g19.g1 CHROMAT_FILE:
MSMg01no441_g19.g1 PHD_FILE: MSMg01no441_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:12 2005
(432 letters)
>mm_chr1_85260877_85261711
Length = 835
Score = 694 bits (359), Expect = 0.0
Identities = 417/441 (94%), Gaps = 13/441 (2%)
Strand = Plus / Plus
Query: 1 aagaaagaaagaaagaaa--gagagagacagagagagagagagagagagagagagagaga 58
||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 199 aagaaagaa--aaagagagggagagagagagagagagagagagagagagagagagagaga 256
Query: 59 gagagagagaga--gaaagaaaggaaggaagaaagaatcataaaatgttttactaaaacc 116
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagagagagagaaagaaagaaacgaaggaagaaagaatcataaaatgttttactaaaacc 316
Query: 117 aaaagggcataaaaagaaaggaaagccaaaaaaaaaa---gagtaaaatgaaaatattta 173
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 317 aaaagggcataaaaagaaaggaaagccaaaaaaaaaaaaagagtaaaatgaaaatattta 376
Query: 174 caaacaaggtaggtatttctctgtgtccataaagagtcaaaatgtggataatttaataat 233
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 377 caaacatggtaggtatttctctgtgtccataatgagtcaaaatgtggataatttaataat 436
Query: 234 agcacaattataaaacagagtacgtttaaaaactgtaactaatgtaaataaaagagggtg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcacaattataaaacagagtacgtttaaaaactgtaactaatgtaaataaaagagggtc 496
Query: 294 tgggaggatggctcagctgatacaggccttgccaccaagtct--gcagacatgagcttgc 351
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 497 tgggaggatggctcagctgatacaggccttgccaccaagtctctg--gacatgagcttgc 554
Query: 352 tcccctaagaactaactacacggtagcaggagagaaccaactccccaaagttgtcctctg 411
|||||||||||||||||||| ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 555 tcccctaagaactaactacatggtagtaggagagagctaactccccaaagtagtcctctg 614
Query: 412 atctcaaaagacacattgtgg 432
|||||||||||||||||||||
Sbjct: 615 atctcaaaagacacattgtgg 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 835
Length adjustment: 9
Effective length of query: 423
Effective length of database: 826
Effective search space: 349398
Effective search space used: 349398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
