Query= MSMg01no441_h21.b1 MSMg01no441_h21.b1 CHROMAT_FILE:
MSMg01no441_h21.b1 PHD_FILE: MSMg01no441_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:17 2005
(452 letters)
>mm_chr1_149080032_149080884
Length = 853
Score = 806 bits (417), Expect = 0.0
Identities = 441/449 (98%), Gaps = 1/449 (0%)
Strand = Plus / Minus
Query: 5 gaattctaagatcatttctctggacaaaaagacccataagatatgtatgatgcatgtatc 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattctaagatcagttatctggacaaaaagacccataagatatgtatgatgcatgtatc 594
Query: 65 tgttgtacttcttttataattcagctcagtagtggtagaactggaccatatttcttttca 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 593 tgttgtacttcttttataattcagctcagtattggtagaactggaccatatttcttttca 534
Query: 125 ttatatttt-cctcatgaaacatcattgcacagttcaaaaaaacatacttacctacatat 183
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttatattttatctcatgaaacatcattgcacagttcaaaaaaacatacttacctacatat 474
Query: 184 aagttattaaaaatttacttcttttaatattaatttgcatggataaatcatattttgact 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 473 aagttattaaaaatttacttcttttaaaattaatttgcatggataaatcatattttgact 414
Query: 244 aaaatttcaattttcactagcaattttttatgtactatttcatttcactcatatgttact 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 413 aaaatttcaattttcactagcaattttttatctactatttcatttcactcatatgttact 354
Query: 304 gtcttcctatgtcttacaacatacaattggatgaaaattaatttatgtaactaattgctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtcttcctatgtcttacaacatacaattggatgaaaattaatttatgtaactaattgctt 294
Query: 364 taactatttgtcttaatttaaatatctagagtatgtcttgtaaaatttaggactgtattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 293 taactatttgtcttaatttaaatatctagagtatgtcttgtaaaatttagggctgtattt 234
Query: 424 gacaagaaatatccataaatatagtaaaa 452
|||||||||||||||||||||||||||||
Sbjct: 233 gacaagaaatatccataaatatagtaaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 853
Length adjustment: 10
Effective length of query: 442
Effective length of database: 843
Effective search space: 372606
Effective search space used: 372606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_h21.g1 MSMg01no441_h21.g1 CHROMAT_FILE:
MSMg01no441_h21.g1 PHD_FILE: MSMg01no441_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:17 2005
(385 letters)
>mm_chr1_148878368_148879152
Length = 785
Score = 634 bits (328), Expect = 0.0
Identities = 368/386 (95%), Gaps = 12/386 (3%)
Strand = Plus / Plus
Query: 1 tatgagtactggaagaaatccatctactagaacttaggaacaagagcttatgaagctagg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgagtagtggaagaaatccatctactagaacttaggaacaagagcttatgaagctagg 260
Query: 61 tgaatttattccagaaaaaaatagaaagatcctttatccatcaatccttacaaggaccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatttattccagaaaaaaatagaaagatcctttatccatcaatccttacaaggaccta 320
Query: 121 tgcatgtgacaatgtaatgcaaatgtatgactctaggacaggatcccaatcacagagcca 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgcatgtgacaatgtaatgcaaatgtatgactctgggacaggatcccaatcacagagcca 380
Query: 181 ctcagactcataagcattatcctccaaacatatgtcccacctccttccagtttggaaatt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ctcagactcataagcattatcctccaaacatatgttccacctccttccagtttggaaatt 440
Query: 241 atctataagagctggctacacagagagatagtagttttctcttagccatggagacgtgtt 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 atctataagagctgactacacagagagatagtagttttctcttagccatggagatgtgtt 500
Query: 301 tatttgagttgaccaaacactgtgtttttttgttttttttttggntttttttttttt-tt 359
|||||||||||||||||||||| |||||||| ||||||| ||||| |||||| ||
Sbjct: 501 tatttgagttgaccaaacactg-gttttttt-----ttttttg--tttttgttttttgtt 552
Query: 360 ggnttttttcaagacagggtttctct 385
|||||||||||||||||||||||
Sbjct: 553 ---ttttttcaagacagggtttctct 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
