GGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCTTTCTCTGCAGTGATTAGTTGCATGTTGTTCTGTGTCTA
GAGATAGGCTGGATGAGGTTTCCTCCTTTCACAATATCTTGTCTACTGAT
GCTTTCTCTGTTCAGGTTGTCTGTGGGATGCCATATTGTTGAGATTCATG
AATGGAGCTTCCTGATCACCTAGAGGCTGAATCACACAACAGATTTCCTG
ATCTGCTGCTTGCTTGCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCT
TTCTCTCTCTCTTCCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTCTCTCT
CTTCCTTTCTTTCTTTCTTTCTTTCCTTCTTTTCTTTCTTTTTTTTTTTA
CACTTTCATAGCATTTTAACATTTAATAGAAACTATATACAGTAAGTTCA
CTACATCTTACATGGAGGAGCCACCACAGGAACTTACATAGGTTAAAAGT
AAGAATAACTAAGGAGAGCCCACACCTGTGAGCTGCTTTTCTCAGTCACA
GCTCACTGGGAACAGAGGTTTATATTGCCCAATTACATGAAGCAGAGGAA
AGGCTTTAATATAGGCCTTTAAATCTGCCTCCCCTTG

NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCTGAGGAATACCAAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGACTCCACCTCACACCAGTCAGAATGGCT
AAGATGAAAAATTCAGGTGACAGCAGATGCTAGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCT
AGAAATCAGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTTCCGGCG
GATCCCGCAATACCTCTACTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAT
CCAGAAGCTGGAAAGAACCCGGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACCCAGTCACAAAAGAACTCACACAACATGTACTCACTG
ATAAGTGGATATTAGCCCAGACACTTANGATACCCCAGATATANGATACA
TTTGCTAAACGCATGAAACTCCAGAAAAAGAAAACCAAGTGTGGACACTT
TGCC

Query= MSMg01no441_j11.b1 MSMg01no441_j11.b1 CHROMAT_FILE:
MSMg01no441_j11.b1 PHD_FILE: MSMg01no441_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:26 2005
         (568 letters)



>mm_chr1_30187995_30188962
          Length = 968

 Score =  671 bits (347), Expect = 0.0
 Identities = 462/565 (81%), Gaps = 100/565 (17%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctttctctgcagtgattagttgcatgttgttctgtgtctagagataggct 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctctctctgcagtgattagttgcatgttgttctgtgtctagagataggct 263

                                                                       
Query: 64  ggatgaggtttcctcctttcacaatatcttgtctactgatgctttctctgttcaggttgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggatgaggtttcctcctttcacaatatcttgtctactgatgctttctctgttcaggttgt 323

                                                                       
Query: 124 ctgtgggatgccatattgttgagattcatgaatggagcttcctgatcacctagaggctga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtgggatgccatattgttgagattcatgaatggagcttcctgatcacctagaggctga 383

                                                                       
Query: 184 atcacacaacagatttcctgatctgctgcttgcttgctttctttctttctttctttcttt 243
           |||||||||||||||||||||||||||||||        |||||||||||||||||||||
Sbjct: 384 atcacacaacagatttcctgatctgctgctt--------tctttctttctttctttcttt 435

                                                                       
Query: 244 ctttctttctttctttctttctttctttctttctttctttctttctctttctttctttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||
Sbjct: 436 ctttctttctttctttctttctttctttctttctttctttctttct------ttctttct 489

                                                                       
Query: 304 ttctctctctcttcctttctttctttctttctttccttctttctttctttctttctttct 363
           ||||||||||||                                                
Sbjct: 490 ttctctctctct------------------------------------------------ 501

                                                                       
Query: 364 ttctttctttctttctctttctttctttctttctctctctcttcctttctttctttcttt 423
                                                 ||||||||||||||||||||||
Sbjct: 502 --------------------------------------ctcttcctttctttctttcttt 523

                                                                       
Query: 424 ctttccttcttttctttctttttttttttacactttcatagcattttaacatttaataga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctttccttcttttctttctttttttttttacactttcatagcattttaacatttaataga 583

                                                                       
Query: 484 aactatatacagtaagttcactacatcttacatggaggagccaccacaggaacttacata 543
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 584 aactatatacagtaagttcactacatcttacatggaagagccaccacagggacttacata 643

                                    
Query: 544 ggttaaaagtaagaataactaagga 568
           |||||||||||||||||||||||||
Sbjct: 644 ggttaaaagtaagaataactaagga 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 177
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)