BAC Information

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BAC

Clone NameMSMg01-441L22
Chromosome1 (Build37)
Map Location 32,988,844 - 32,989,350
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041238, Khdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441L22.T7 (MSMg01no441_l22.b1)MSMg01-441L22.TJ (MSMg01no441_l22.g1)
ACCAG531555AG531556
length788811
length of high quality
(start - end)
512 (69 - 580)449 (75 - 523)
definitionCHROMAT_FILE: MSMg01no441_l22.b1 PHD_FILE: MSMg01no441_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:38 2005CHROMAT_FILE: MSMg01no441_l22.g1 PHD_FILE: MSMg01no441_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTAAGAATCTGAAGATAGGAACAAGTTACCTACAAAGCATGCTATT
TTAGGAAACTCAATAACCATCTTAAACTCCTGCTTTCAGAGAATGAGGGC
AACACACCAGATGAAGCCAAGACATCTCATCTCTAACAACTATGAACTGA
TCAAACATATCCTTAACTTGATGGCATCTCTGAGACATTCTGAAAGCACA
CATAGTACCATGAGTTACTTGATTGAAGTGTCAGCCCCAAATGATTTTTC
TGAGTTTAATATGTTTGTCAAAACAAAGCCTGAAATTTTCCTAAATCATA
CCTAGGGCACACTATATAAGCATATTTAGGTAATAGAAACCAAATAACTG
CCTAACGAGCTTCAAGGGAGGAGACTGGTGAGGAGTTCTGGTTACTTCTC
AGCCAGTATCTTCTGATGATTTGTTTAGCATGGTGACAACCAGGGTCTTA
TTCCAATTGCTCAAGTCTTAATTCTGACTACATAGCCTCACAAGCCCTTT
CCAAAAATGGGGATTCGAGAGGCATACCCGCCACCCCAGTCTTTAAGCGG
TCGTGAAATCTGTCCTGAAATGAGGTTAGGTGGCAGGGAGACCATCCTTG
ACTGTGCTAGCCTGCAGCATCAGCGAGGAACTGAGGTAAGGCCCGTTTAA
CCACCCCGTGTATCACTTAAAAAACACCACTCAATGGACCTCCGGGGGGT
TTTTAAAGTGGGCACCATATTTAGGGCTCGGCCCCCCN
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGCAGATTCAACAGTCATTAGTAA
CTTTCGTGGAACCCATAAAAAATTCTGCTTTGATGTCTCTTGTTGCTCTC
AAACCAAAGCCCTCGACAGAAGCCCCGTTTTCAGAGGCCCATTTCATTAG
ATCAGGGAAGTAATCGTCTCTTTTTCCATCAAAAGTAACAGACAGACCTT
TTTGCTTCTTCCGTATTTTCTCAACCAGAGCCCGGATCTGCCTGTACTCT
TCCCATTCTTTCCCTGGGCCGGGTGCAGGACTGCTACATTTCTGCAACAG
CTCACTTGTCAGGTTCAAAATTTCCTTTGGTGACACAGTGGCTGTAGCCC
CAGTACCTGATTTCTGAGTTTTCACTCGACTCTTCTTACCCATTTTCTGA
CTGCCTGCTTCGTCTCCGCGCAGCGGCGGCGCCACACTCCGGCCGGGACC
CCACGGTCCGCCTCAACCAACCCTCAGGAGGCCATGAATCAAATCTTAAC
TTGTTCTTAATTCCGAGAGTTGTAAACAAAACTGTGAACCAAACTACCCC
AGAAAGAATCCGGGGTTTTCTTACTCAATTTAAAAAGAAAGGTACCCAAA
TTTTCTAATTTTGGCCCCCCTTTTCTTTTTCCCCCCCCGGGGGGGGGGTT
GGGGGGAAATATATTGTGTCCTTTGCGCCCCCTTCTCCTTTTTTTTCTCT
CCCTTCTTCTTTCTCCCCCCCCTTTCTTTTTATTTTCTATCTTTACTCTT
TTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_l22.b1 MSMg01no441_l22.b1 CHROMAT_FILE:
MSMg01no441_l22.b1 PHD_FILE: MSMg01no441_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:38 2005
         (512 letters)



>mm_chr1_32988644_32989550
          Length = 907

 Score =  864 bits (447), Expect = 0.0
 Identities = 496/513 (96%), Gaps = 7/513 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggaacaagttacctacaaagcatgctattttaggaaactcaataaccatcttaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataggaacaagttacctacaaagcatgctattttaggaaactcaataaccatcttaaact 260

                                                                       
Query: 61  cctgctttcagagaatgagggcaacacaccagatgaagccaagacatctcatctctaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgctttcagagaatgagggcaacacaccagatgaagccaagacatctcatctctaaca 320

                                                                       
Query: 121 actatgaactgatcaaacatatccttaacttgatggcatctctgagacattctgaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actatgaactgatcaaacatatccttaacttgatggcatctctgagacattctgaaagca 380

                                                                       
Query: 181 cacatagtaccatgagttacttgattgaagtgtcagccccaaatgatttttctgagttta 240
           |   |||||||||||||||||| |  | ||||| ||||||||||||||||||||||||||
Sbjct: 381 cgtgtagtaccatgagttactt-a--g-agtgttagccccaaatgatttttctgagttta 436

                                                                       
Query: 241 atatgtttgtcaaaacaaagcctg-aaattttcctaaatcatacctagggcacactatat 299
           |||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||| ||||
Sbjct: 437 atatgtttgtcaaaacaaagcctgcaaa-tttcctaaat-atacctaggacacaccatat 494

                                                                       
Query: 300 aagcatatttaggtaatagaaaccaaataactgcctaacgagcttcaagggaggagactg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aagcatatttaggtaatagaaaccaaataactgcctaacgagcttcaagggaggagactg 554

                                                                       
Query: 360 gtgaggagttctggttacttctcagccagtatcttctgatgatttgtttagcatggtgac 419
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 555 gtgaggagttctggttacttctcagccagtgtcttctgatgattcgtttagcatggtgac 614

                                                                       
Query: 420 aaccagggtcttattccaattgctcaagtcttaattctgactacatagcctcacaagccc 479
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 615 aaccagggtcttattccaattgctcaagtcttaatcctgactacacagcctcacaagccc 674

                                            
Query: 480 tttccaaaaatggggattcgagaggcatacccg 512
           |||||||||||||||||||||||||||||||||
Sbjct: 675 tttccaaaaatggggattcgagaggcatacccg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 907
Length adjustment: 10
Effective length of query: 502
Effective length of database: 897
Effective search space:   450294
Effective search space used:   450294
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)