CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCATTTTTACCAGCTGAGTAATACTCCATTCTGTGAATGTACCAC
ATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGCATTCTTTCCAGCT
TCTGGCTATTATGAACAAGGCTGCTATGAACATAGTAGAGCATGTGTCCT
TATTACATGCTGTAGCATTTTCTGGGTATATGCCCAGGAATGGTACAGCT
GGGTCCTGAATGCGAGGACCAAGATGTGGTAGTGGGTGAGTTGGTGAGCA
GGGAGAGGGGGGATGTNATTTTTTTTTTNNNNTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTNTNNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTCCCCNTNTGTTTTTTTTTTTTTTTTTTCTTTTTT
TTTCTTTNTTTTTTTCCTTTTTCCCCTTTCTCCTTCCCCCTTTTTCTCTT
CTCTTTTCGGTCTTCTCCTCTCCCTCCCTCCCTTCGTCCTCTTTTCCGCC
CCCTTTTTCTCGTCTCTTTCTTTCTTCTCGCCTCTCTCTCCTCCTTCTTC
TTTTTTTGTTCTCCCTTTCCTTCTCCCCTCCTCTTTCTCCCCCCCCTCCC
CTCTTTTTTTCCCCCTTTTTTCCTTTTTTNGTTACCCTCCGTCCCCCGCC
TCTTTTCCCTCTTTTGTTTTTCCCTCCCCCCTTCTCTTCCTTCTTCTTAC
CTCCTTCGTTTCCCTCCTTCCCTC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATATTGACCACCAGTCCCTCAGAAAGGGG
TTTATGGAGCGAAGATTCTGTTCCTGGCTACAGGATGTTGCCACTCTCAG
CAGCAATGGTTGAGCTTGAAGGCAGGTCTGAGGTGGTAGACAGGGCAAAT
GTTGCAGCACAGTGTCGGGTGGACCCTCTGAGGATGCATAACTTGAAATT
ATAAAAGAGTTTGAAAAGGAGTTGTCAGTTGCTGAAAAACAATAACAACA
ACATCAACAAAACAGAACAAAAACCAGGAACAACCCGGAAGTAGATTGAC
TTTCAAGGTGAATGTGTTACTCTAGCCTGATCCACCTGACATCCTTCTCC
TACACTCAGGTGGGGTCCCTGTCTGGTTGGTTCCCTACAAAAGGAAGGAG
TCTCTTGATGACCACTGGGGACTAGACTACAGCTCCACAGCATAGCCCCT
GAGTAGAGATTAACAACCACCCAGTGATTTCAAGCTATTCCTGTGCACAG
ACTTGCTTTGCACAGGGAGGTTGTTGAATGAATATCAATTTGTAGAAGAA
CCACCAAAAAAGAATAAATAAATGAACCCTTAAATGACTCCAAACAAGTT
GTGCCTGANGGCNACGTAGAAAAAGTAGTGGTTTTTATAGAGAGACTTTT
AAACCCGAAAAGGCTTCCACGGTTTTAGAATAGAGGGACAAACCCACAAC
TCCCCGCGTCTTTGGTTAACCTTGCAAGGGCCATTTTCN

Query= MSMg01no441_o19.g1 MSMg01no441_o19.g1 CHROMAT_FILE:
MSMg01no441_o19.g1 PHD_FILE: MSMg01no441_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:53 2005
         (519 letters)



>mm_chr1_41718097_41719021
          Length = 925

 Score =  830 bits (429), Expect = 0.0
 Identities = 500/527 (94%), Gaps = 10/527 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatattgaccaccagtccctcagaaaggggtttatggagcgaagattctgttc-ctggct 59
           ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 725 aatattgaccaccagtccctcagaaaggggtttatagagcgaagattctg-tctctggct 667

                                                                       
Query: 60  acaggatgttgccactctcagcagcaatggttgagcttgaaggcaggtctgaggtggtag 119
           ||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||
Sbjct: 666 acaggatgttgccactctcggcagcaatgggtgagctggaaggtaggtctgaggtggtag 607

                                                                       
Query: 120 acagggcaaatgttgcagcacagtgtcgggtggaccctctgaggatgcataacttgaaat 179
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 606 acagggcaaatgttgcagcacaatgtcgggtggaccctctgaggatgcataacttgaaat 547

                                                                       
Query: 180 tataaaagagtttgaaaaggagttgtcagttgctgaaa------aacaataacaacaaca 233
           |||||||||||||||||||||||| |||||||||||||      ||||| ||||||||||
Sbjct: 546 tataaaagagtttgaaaaggagttttcagttgctgaaaaacaacaacaacaacaacaaca 487

                                                                       
Query: 234 tcaacaaaacag-aacaaaaaccaggaacaacccggaagtagattgactttcaaggtgaa 292
           |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 486 tcaacaaaacagaaac-aaaaccaggaacaaccccgaagtagattgactttcaaggtgaa 428

                                                                       
Query: 293 tgtgttactctagcctgatccacctgacatccttctcctacactcaggtggggtccctgt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgtgttactctagcctgatccacctgacatccttctcctacactcaggtggggtccctgt 368

                                                                       
Query: 353 ctggttggttccctacaaaaggaaggagtctcttgatgaccactggggactagactacag 412
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||| | | ||||
Sbjct: 367 ctggttggttccctacaaaaggaaggagtctcttgttgaccactgggaactggtcaacag 308

                                                                       
Query: 413 ctccacagcatagcccctgagtagagattaacaaccacccagtgatttcaagctattcct 472
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 307 cttcacagcatagcccctgagtagagattaacaaccacccagtgatttcaagctattctt 248

                                                          
Query: 473 gtgcacagacttgctttgcacagggaggttgttgaatgaatatcaat 519
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtgcacagatttgctttgcacagggaggttgttgaatgaatatcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 925
Length adjustment: 10
Effective length of query: 509
Effective length of database: 915
Effective search space:   465735
Effective search space used:   465735
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)