BAC Information

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BAC

Clone NameMSMg01-442C15
Chromosome1 (Build37)
Map Location 105,696,030 - 105,696,245
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442C15.T7 (MSMg01no442_c15.b1)MSMg01-442C15.TJ (MSMg01no442_c15.g1)
ACCAG531875AG531876
length770877
length of high quality
(start - end)
519 (74 - 592)216 (77 - 292)
definitionCHROMAT_FILE: MSMg01no442_c15.b1 PHD_FILE: MSMg01no442_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:13 2005CHROMAT_FILE: MSMg01no442_c15.g1 PHD_FILE: MSMg01no442_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTTTGCACAATTGAATGGCTGAGAAGCAACTAANAAAATG
TTCAACATCCTTAATCATCAGGGAAAGCAAATCAAAACAAATCTAAGATT
CGACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGACAGCA
GATGTTGGAAAGGATGTGGAGAAAGAGGAACACTCTTCCATTGCTGATGG
GATTGCAAACTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCTTCAG
AAAATTGGACATAATACTACCTTATTATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTCCAACTGGTAATAGGAACAGATGCTCCACTATG
TTCATAGCAGCATATTTATAATAGCCAGAAGCTGAAAAGAACCCAGATGA
AATATAAAATAACTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTA
TGATAAGAACTTCAAGTCTCTAAAGAAAGAAATTAAAGAAGATCTCAGAA
GATGGAAAGATCTCCCATGCCCATGGATTGGCAGGCTCAACATTGTAAAA
ATGGCTATCTTGTCAAAGCAATCTACAGATTCTATGCAATCCCCATCAAA
ATTCCCACTTCTTTTCTTCTACGAAATAATAAAATGCATCCGGCAGAATC
CTTCTGGATATACACAAAAACATAGGATACGAAAATCTCGCTCTCCAGGA
TTTAGAAAAACACCTTGTGG
NCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGTGATACATAATTTGAGAA
TGGTAACAGAATCATCAACATATATAGGTCTGATATGGTTAAGGCACAGA
TTTACTTGTGCACTTATGGCATATATGAAAATTTTACAAGAACTTTTTTA
ATGTGCCTGACAACCTGTGGTCTAATCCTGCCATCTACTGGACAGATTAA
CTAGGTGCATGGAAGGTTGAAAGAGGGAGAGGGAGAGGGAGAGTTTTCNN
TTTTTTTTTTTNNNNNNTTTTTTTTTTTTTNNNGNGGGNGGTGTGCGTGG
GGGGGGGGTTTTTTTTTTTTCTTTTTGCGTTCTCTTCTTTCTTTTCTTCT
TTTTCTCCCCTTTCTTTTCTCTTTCCTCCCCCTCTCTTCACCCTTTTTTT
CATTTTCCTCCCTTTTTCTTTCTCCTTCTTTTCCCTCCCTTTTTCTCTTC
CCCTTCCTTTCTTTTCCCTTCTCTCTCTTTCTTTTCTCTTTCCTTCCTCC
CTCTTTTCTTTCTTTTCCTTTCCCCCCCCATTCTACCCTCCCTTTCCTAT
CCTACATCACTTCCCCCTATTTTTCCCCCCCCTTACTCTTCTTTCCTCCC
TCCTCTTCCCATCTTTCTTCTTCCACTTTATCTTCCCCCTCTATCTTCCC
CCCTCTCTTCCTCCTCTCCTTTCTCTTCTTTCTCCCTTCTTTTTCTTCTT
TTTTTCTTTTTCCTCCTCTTACCCCTTCTTTTTTCCTATTCTTCTTCTCA
TTCTTGTTCTTCTTCTTTTATTTCACCCCTCACTTATCTTCTTTTTTCCT
GTCTTTCTTCCCCCTTACCACCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_c15.g1 MSMg01no442_c15.g1 CHROMAT_FILE:
MSMg01no442_c15.g1 PHD_FILE: MSMg01no442_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:13 2005
         (216 letters)



>mm_chr1_105695851_105696466
          Length = 616

 Score =  371 bits (192), Expect = e-107
 Identities = 210/216 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcagtgatacataatttgagaatggtaacagaatcatcaacatatataggtctgatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tatcagtgatacataatttgagaatggtaacagaatcatcaacatatataggtctgatat 336

                                                                       
Query: 61  ggttaaggcacagatttacttgtgcacttatggcatatatgaaaattttacaagaacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 335 ggttaaggcacagatttacttgtgcacttatggcatatatgaaaattgtacaagaacttt 276

                                                                       
Query: 121 tttaatgtgcctgacaacctgtggtctaatcctgccatctactggacagattaactaggt 180
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 275 tttaatgtgcctgacaatctgtggtctaatcctgccatctactggacaaattaactaggt 216

                                               
Query: 181 gcatggaaggttgaaagagggagagggagagggaga 216
           ||||||||||||||| ||||||||| ||||| ||||
Sbjct: 215 gcatggaaggttgaaggagggagagagagagagaga 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)