BAC Information

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BAC

Clone NameMSMg01-442C19
Chromosome1 (Build37)
Map Location 10,834,291 - 10,834,621
singlet/doubletsinglet
Overlap genenone
Upstream geneSgk3, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442C19.T7 (MSMg01no442_c19.b1)MSMg01-442C19.TJ (MSMg01no442_c19.g1)
ACCAG531883AG531884
length758801
length of high quality
(start - end)
388 (73 - 460)331 (77 - 407)
definitionCHROMAT_FILE: MSMg01no442_c19.b1 PHD_FILE: MSMg01no442_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:13 2005CHROMAT_FILE: MSMg01no442_c19.g1 PHD_FILE: MSMg01no442_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGTCTTACCACCCAGACAGAATGACAATGGTCTATTAGAGAA
GCAGTTAGAGTATCAGTTACTCAATACTTTACAGAGTTTATAAGACACAT
TATATGAGAAAACATTTGCATTATGGGAATTCCAGGGGAGAAGAAAGACA
TTGAAAGCCTATTTCATAAAATAACAGCTGAAAACTTTTTAAATCTTCAA
AGAGCTGTAAATGACCAGATCTGAGAAGCTCAAAACGACCCCAACTAGAT
TCAGTGGGAAAAAAAAAAAACTTCTCCAAAATAAATTACATTGAAGATGT
CAAAACTACAAGACAATGAGAAAATTCTAAAAACAGCATTAAAATTTTAA
GTCATATGCTGGAGATGCTCATTTGACTTTTCAGATTTCTCAGCAGAAAT
CTTACATTGCAGAAGAGTATAAGATGGTGCATTCAAAATACTAAAATAAC
AAAACTTTCCACCAAGGTTATATGCAGCAACATTTCCTTCAGAAATAAAG
AAAACTAAGCCTTTTCTGGATAAGAAGAAAATTAAGAGGTGCCATCACTA
TCCGATCAAACCTACCAAGAAATGGCTAAGAGAGTTCTGCTGAATACAAA
TGATAATAACTGCCATCCTGAAAATATGAACCCCCCTCTCACTCTCTTCT
TTTTTCTTTTTTTTAATACTTCATATATTACCTAGATATATTTATCTGCA
ACTTAAAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTGATCTTCCATCTCCTTTTC
CTTGCATGTCTATTCCTCTGACATTTACCATGCTTTAAAGGCAAAGGCTT
CAAAGAGACCAAAAGAATTTATCTAGGGATAAACTTTATTTATATTTACA
AAGCATCAGTAAAGTTTTAAAATAATAAGAAAACATATTTAGAATTTTCA
ACTCTAATCAATACTTTCTACCTAGAAGCAAACCAAAAATTAAAAATGTA
GTGTCCAGCTGGTTCAATATTTTATTAAGATTACTGTCACCTACCCATTC
TGTTTGTACTCAACTTTATAAAATGTTGGTTAAGAATATGTTGTTATTTT
TTAATGGGGGGGCTAGTACCATAACTATCTGCGCGTTCTGGTATCGTCTA
TTTTTTCTTGCTTTACGACTTTCCTACTTGCTTTTTATCCTAATTTCTTG
ATGTTTTTCTCTTACCCCTCCATTTCCCTCCTCCCCCCTTTTTCATTCTC
TTTCTCCACTTCCCTCCCCTTTTCCCCTCTTTCTTTTTTCCCCTATATCT
CGCCTTCTTTTCCTTATTACATCCCTTCTTCGTCGCCTTTTTTCTATCCA
TCTCTCTCTCTTTCGTCATCTTTTCCATTTTATTCCCTCTCCCCTCCCCC
CCTTTCTTCTCCTCTTTCTTTCCTCTTTCTTTACTTCCTCTATTCTCTTT
ATTTCCTTCTCTTCTCTTTCTCTTCTTATTCCCTCCCTTCTTTCCCCCTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_c19.g1 MSMg01no442_c19.g1 CHROMAT_FILE:
MSMg01no442_c19.g1 PHD_FILE: MSMg01no442_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:14 2005
         (331 letters)



>mm_chr1_10834091_10834821
          Length = 731

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgatcttccatctccttttccttgcatgtctattcctctgacatttaccatgcttt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 531 tgtttgatcttccatctccttttccttgcatgtctattcccctgacatttaccatgcttt 472

                                                                       
Query: 61  aaaggcaaaggcttcaaagagaccaaaagaatttatctagggataaactttatttatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaggcaaaggcttcaaagagaccaaaagaatttatctagggataaactttatttatatt 412

                                                                       
Query: 121 tacaaagcatcagtaaagttttaaaataataagaaaacatatttagaattttcaactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tacaaagcatcagtaaagttttaaaataataagaaaacatatttagaattttcaactcta 352

                                                                       
Query: 181 atcaatactttctacctagaagcaaaccaaaaattaaaaatgtagtgtccagctggttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atcaatactttctacctagaagcaaaccaaaaattaaaaatgtagtgtccagctggttca 292

                                                                       
Query: 241 atattttattaagattactgtcacctacccattctgtttgtactcaactttataaaatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atattttattaagattactgtcacctacccattctgtttgtactcaactttataaaatgt 232

                                          
Query: 301 tggttaagaatatgttgttattttttaatgg 331
           |||||||||||||||||||||||||||||||
Sbjct: 231 tggttaagaatatgttgttattttttaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)