BAC Information

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BAC

Clone NameMSMg01-442K05
Chromosome1 (Build37)
Map Location 38,224,742 - 38,364,882
singlet/doubletdoublet
Overlap geneAff3
Upstream gene4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442K05.T7 (MSMg01no442_k05.b1)MSMg01-442K05.TJ (MSMg01no442_k05.g1)
ACCAG532235AG532236
length775761
length of high quality
(start - end)		366 (78 - 443)243 (82 - 324)
definitionCHROMAT_FILE: MSMg01no442_k05.b1 PHD_FILE: MSMg01no442_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:53 2005CHROMAT_FILE: MSMg01no442_k05.g1 PHD_FILE: MSMg01no442_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,364,522 - 38,364,882)(38,224,742 - 38,224,984)
sequence
NAATGGNATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCTTTACAAAGAGGGTTCCCAGCCTCAGCCCACCTG
CTCACCTCAGAGGGCCTCTGCTGCTGGCACAGGCCACCACAGTGAAGCCA
TGCCTCCCAGATCTCACAGAGAATGTAAAATGCATTGGCCGCTGCAGCTA
AGGTTCTGTCATAGAAAATTACCCACTTCCGCCTCTAGTCTGACATGGCT
GAAGTACATGGTTAGGGCAGATGACTGAAATTTTACACACATGCCTACGT
ACACTCACCTTTTTAGGTTGTTTTCTTTTTCAATACTTTGCATATTTAAA
AAATAAGGACTGTATGGAATTTCAAGCATTCAGGCAATAAAAGAGAGTAT
TTAGTGATCACAAGTTGGCATACTTATGCTAAGTGCACAGATCAGTTGTG
TTATTTAAACGAATGTGAACTGAAGCTGCAAGGGTGGCTGAGTTATTTCA
CATTCTTCGCTTACCATACATTTTTTCTTTCCTTTTACCCATCAAGTTCA
ATTTCACTCTTTTCTACTGTACCCTGCCTTTCACCTTACCCCTGTTCCCT
TTATCTTCTCTCCCATATATTCTTTGATCCTTTATTTATTATTGTTCTTT
TTCCTTTACCTACTACTTCACGCTCATGTTTATATATCCCCCCCTACGAC
ACCACATGTCCTTTTATCTTATATATACTCCTTACTTATTTCTAAACACT
TATTCTTAATCCATAATCCAATATC

AGGGACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCAGACGAAATCATCGTGGCTCAGCCTTCT
AAGGAATAACATAAGATGGCTCTTCTGTATGGAGGAGCAGTGATCTTTGT
AATGTAGGAAGCACCCAGAAGGAATCCGGAAGAGCTCTGAATGGACCGTG
ATGGGTAGGGACAATACTTGGAAGTACGAAGTAGTTTTCTCACCATTCTC
TATGGACCCAGTGATTAGTCTGCCCATTTGATGTATCTGTGTACCAACAG
TGACTACATTCTTGTTGATCATAGAATTTTTTTTTAGACTCCAGAAAGAT
CAGGAAAAGTAGCCAGTATAAATATAAAAGCCATAAGGCAGAAGTTCCAA
GGACAAGTGGGTCTAGTCTCTTTGACAAGTAGAGGAGATTTAACAGCCTC
AAGCAGACCTGACCCAGGCGATACCTCAGAGGGGGTGCGTGCTGGGTGTA
CCTGTATGAGAGGGAGGTTTGCTCCCCCACTTATTTTTTTCTCCCTTTAC
TCTCCCCTTTCCCCCCTCTCTCTTCTCCCTTTTTTTCCTTTCTTTACTTT
TTTATCCCCTATTTTTCCCTTCCTCTTCCCTCTCCTATTTTGTCACTTTC
TTTCTTTTTTTCTCCTCTCCTCTTTTTTTTTTTTTCTTTCTTTCCTCTTC
TTTCTTCCTTCTTCACTCTTCTTTTTTTATCTTTTCTTTTCTTCCCCCCC
TTTCTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_k05.b1 MSMg01no442_k05.b1 CHROMAT_FILE:
MSMg01no442_k05.b1 PHD_FILE: MSMg01no442_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:53 2005
         (366 letters)



>mm_chr1_38364322_38365087
          Length = 766

 Score =  652 bits (337), Expect = 0.0
 Identities = 355/361 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttcccagcctcagcccacctgctcacctcagagggcctctgctgctggcacaggccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttcccagcctcagcccacctgctcacctcagagggcctctgctgctggcacaggccac 502

                                                                       
Query: 61  cacagtgaagccatgcctcccagatctcacagagaatgtaaaatgcattggccgctgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagtgaagccatgcctcccagatctcacagagaatgtaaaatgcattggccgctgcag 442

                                                                       
Query: 121 ctaaggttctgtcatagaaaattacccacttccgcctctagtctgacatggctgaagtac 180
           ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ctagggttctgccatagagaattacccacttccacctctagtctgacatggctgaagtac 382

                                                                       
Query: 181 atggttagggcagatgactgaaattttacacacatgcctacgtacactcacctttttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggttagggcagatgactgaaattttacacacatgcctacgtacactcacctttttagg 322

                                                                       
Query: 241 ttgttttctttttcaatactttgcatatttaaaaaataaggactgtatggaatttcaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttttctttttcaatactttgcatatttaaaaaataaggactgtatggaatttcaagc 262

                                                                       
Query: 301 attcaggcaataaaagagagtatttagtgatcacaagttggcatacttatgctaagtgca 360
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 attcaggcaataaaagcgagtatttagtgaccacaagttggcatacttatgctaagtgca 202

            
Query: 361 c 361
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no442_k05.g1 MSMg01no442_k05.g1 CHROMAT_FILE:
MSMg01no442_k05.g1 PHD_FILE: MSMg01no442_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:53 2005
         (243 letters)



>mm_chr1_38224542_38225184
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcgtggctcagccttctaaggaataacataagatggctcttctgtatggaggagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcgtggctcagccttctaaggaataacataagatggctcttctgtatggaggagcagt 260

                                                                       
Query: 61  gatctttgtaatgtaggaagcacccagaaggaatccggaagagctctgaatggaccgtga 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gatctttgtaatgtaggaagcacccagaaggaatctggaagagctctgaatggaccgtga 320

                                                                       
Query: 121 tgggtagggacaatacttggaagtacgaagtagttttctcaccattctctatggacccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtagggacaatacttggaagtacgaagtagttttctcaccattctctatggacccag 380

                                                                       
Query: 181 tgattagtctgcccatttgatgtatctgtgtaccaacagtgactacattcttgttgatca 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattagtctgcccacttgatgtatctgtgtaccaacagtgactacattcttgttgatca 440

              
Query: 241 tag 243
           |||
Sbjct: 441 tag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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