BAC Information

Click to search

BAC

Clone NameMSMg01-442N07
Chromosome1 (Build37)
Map Location 128,459,828 - 128,460,156
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442N07.T7 (MSMg01no442_n07.b1)MSMg01-442N07.TJ (MSMg01no442_n07.g1)
ACCAG532382AG532383
length797797
length of high quality
(start - end)
225 (73 - 297)328 (83 - 410)
definitionCHROMAT_FILE: MSMg01no442_n07.b1 PHD_FILE: MSMg01no442_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:11 2005CHROMAT_FILE: MSMg01no442_n07.g1 PHD_FILE: MSMg01no442_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTTTATTCCTCGCGGGNCGCAATAAGAATTACTATTCCAAGAGGAT
CCGCGGAATTCAACAGTTTCCCTAGAGAGCCGGCCAGCAAGCCTCAGGGC
TCCTTCCATTTCTACCTCCCCAGTGCTGTGACTCAGGTGTGTGCTACCAT
TCCTGGCTTTTTATATGAATCCTGGGAACCAAACCCAGATCTTCATGAGC
GTGCTGCAAGCATTTTCCTAACTGAGCCATCTTCCCAGACCATGTTGAGT
TTTTTGGTACCTGATGACAGATAGATACATTAGGTTGATTTCTAAAAGGC
TTGGGGAAGAGGCACAGAGAAGACAATTACTTGGTCCTAAGGATACGTTC
TTCCTGGGTCATGCTTTTACACGTGTGTCTGGGCCTGTTCTTATAAAACC
TTGACCACTGCTTCTCTCTGCCCCTGCTTTGTCTTTTCGTTTTCTCCCTT
CCCCTATCTCTTTCACTGTCTTTTTTTACCCCTTTGACCCCCTCCTTCTT
TTTTCTCCTCCCTTTTATTTTTCCTCTTCTTCTTCTTGTTTACTCCTTTC
TTTCATTTCATTCCCCTTTCTCCTTTTCAACCTATCTTTTTCTTTTTTTT
TCCTATTCTTTTTTTTCTTTCCCTCTCTTTTTATCCCCTATTATCTTACC
CCTCTCCTTCTTTTCTTCCCTCCCCCCCCTTTTTTTTTTTCCTCTCTCTT
TCCGCTTTCACTTTTTCTCCCCCCCTCTTTTTTCCCTTTTTTCTCCCTTT
TTTTTCTTCTCCCCCCTTGTTTTTTTTTTTCTCCTCCCCCCCCCCCT
TTCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGGGAAACTACTTA
GGCATGAGTTAAGTTGGTGTGCAAACATTTATAAAAAGTATTTATTTAAG
AGGGTCAGGAAGATGGGTAAAGGTGCTTGCAACATAAATCTGAAGATCTT
AAGATCTAAGGTTAATCCCCCGAATCCACATGTAAAATGCCATATGGGAA
AGAATCTATCTGTAATCCAGCATTCCTACAGAGAGCTGGGCAGCAGAAAC
AGGAGCCTCAGCTGAAAGCTCATGTTTCAGCTAGTGTGCGGGATACAGCA
CCTCAACAGAAACAGGAGAGGCTTGACTCAGCAAGATGGGAAGTGAGAAC
TGCCTCTCAGACAGTGGCTCTCTGACCTCCATATGCATCTTGTGGCACTT
GCATGCCTGTGCATGCCAGCAACGCTAACTAATCTGCTTATATTATTTGT
TTCCCAACCTTCGTTCCCCTTACCCTGCAATTTTATATCTCCCCCTTCCC
CGTTTCTTTTTTTTCTTCTTCTCTTTTCCCCCTTTTTTCCCCCTCTCTCC
TTTTTTCTCTCCCCCCCTCCTTTCCTCTACTTTCTCCTTCTTCTCCTCCC
CTCACTCCTCCCTGCCTCCACCCCTCCCCTCTTTTCCTTTCCCCTCCTCA
TCCCCCCCTCGCTTCCCACCTTCTCTTCTGAATTTCCTCTCCCCCACCCG
CCCTCTTTCTCTTCTTTATTTCTTTTTCTCTCTTTCCTCCCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_n07.g1 MSMg01no442_n07.g1 CHROMAT_FILE:
MSMg01no442_n07.g1 PHD_FILE: MSMg01no442_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:11 2005
         (328 letters)



>mm_chr1_128459628_128460356
          Length = 729

 Score =  590 bits (305), Expect = e-173
 Identities = 323/329 (98%), Gaps = 1/329 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttgggaaactacttaggcatgagttaagttggtgtgcaaacatttataaaaagtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttgggaaactacttaggcatgagttaagttggtgtgcaaacatttataaaaagtatt 260

                                                                       
Query: 61  tatttaagagggtcaggaagatgggtaaaggtgcttgcaacataaatctgaagatcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttaagagggtcaggaagatgggtaaaggtgcttgcaacataaatctgaagatcttaa 320

                                                                       
Query: 121 gatctaaggttaatcccccgaatccacatgtaaaatgccatatgggaaagaatctatctg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gatctaaggttaatcccccgaatccacatttaaaatgccatatgggaaagaatctatctg 380

                                                                       
Query: 181 taatccagcattcctacagagagctgggcagcagaaacaggagcctcagctgaaagctca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 taatccagcattcctacagagagctgggcagcagaaacaggagcctcagctgaaagttca 440

                                                                       
Query: 241 tgtttcagctagtgtgcgggatacagcacctcaacagaaacaggagaggc-ttgactcag 299
           ||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tgggccagctagtgtgcgggatacagcacctcaacagaaacaggagaggccttgactcag 500

                                        
Query: 300 caagatgggaagtgagaactgcctctcag 328
           |||||||||||||||||||||||||||||
Sbjct: 501 caagatgggaagtgagaactgcctctcag 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 729
Length adjustment: 9
Effective length of query: 319
Effective length of database: 720
Effective search space:   229680
Effective search space used:   229680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)