BAC Information

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BAC

Clone NameMSMg01-442O13
Chromosome1 (Build37)
Map Location 166,116,733 - 166,116,978
singlet/doubletsinglet
Overlap geneF5
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp
Downstream geneSlc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442O13.T7 (MSMg01no442_o13.b1)MSMg01-442O13.TJ (MSMg01no442_o13.g1)
ACCAG532441AG532442
length769759
length of high quality
(start - end)
350 (76 - 425)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no442_o13.b1 PHD_FILE: MSMg01no442_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:19 2005CHROMAT_FILE: MSMg01no442_o13.g1 PHD_FILE: MSMg01no442_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCTATAATTGCGGCGCCAAANGAATACTATTCAAATAGGTGCGN
GGNAATCCTATTTTCCCTGCAGGTTTTCATAATCTATTCATCTGCTGACG
GGCATGGGGGCTGACTCCTTCCTTGCTACTATGGAGAGAACCATGGTAAA
CATGAACGTGCGGGTACTTCCATAGGCCATAGAGTTCTCTGAGCACCTGC
AAGGAGCCGTAGGGCTGGGCCATGAGGGAGATCAACCTGCATGCTTTTGG
TGGTACCACACTGCTTTCCACAGGGGCTGTCTCGCTTTACACCCCCAGCA
ACAGGGAATGAGGCTTTTTTCCTTCTGATGTCTTCTCCAGACTTTGTCCT
CATTTGTTTTCGGGTGATTGGTAAGCTATGCTATAGAAATTCCTATTTTT
AACTCAGTACAATGTAACCATTTAAACATAACTGTCTCTATATTGGATTC
TGCTTTCCAGTGTAACTAAGGATTTGATTTGACTTATAACACTTCCATAT
TTTTCTCTCACATGATTTTATTTCTTGCACCTTGTTGAACATTTTGCCGT
TTAGCTACCTCCTCTTTCCTTTAATCTTTTTCGGGTCCGTTGGAATCCCA
CCGCTTTTTCTTACCCTTCTTTCTTTACTATGTCGTTGACCCCTAAAACT
CCCCCCCCGTGTTCTATTTCTATTCTCTTCCCCCCGTCGCACCTCTTTTC
TTCTCTTCTTATTAATTTCTTCTCCTGTTTTTCTAAATTTTTTTTTTTAT
TCCCCTACCCTGCCTTCCN
GATGCACGATGATGGGGGAGGCCTGGNGGGCGCCTGTCGACAAACTTTAG
GTGAACTATAGAATTTCCGCGCAATTCTCTGACTCCTTCTCTTTGTGTTC
AAATTAGCTTTATCTCTGACAAGGGTTTGGTAAATCATGGCCTCCTAGGT
GCCAGACACGTGGCTCCTCTGGACCCCACGACAATGGGGACATAGGCAGC
CCACCAGAGCAGTGATCACTGCCCTTTCCCCTGCAGAGGGTGGCGGACAT
CGAGTAGCAGGCCGTGTTTGCTGTGTTTGACGAGAACAAGAGCTGGTACA
TTGAGGACAACATCAACTTTTNCTGNGAGAATCCTGATGAGGTGAAGCGT
GATGATCCCTAGTTTTACGAATCAAACATCATGAGCAGTAAGTCAGACTC
CCGTGTCCACACTGGGGGTCGCAGTGTGTCTGTACCCAAAGGAAAAAAAT
GCGATGTTGGTCATAATCCTCTCTAATGCACCCTCTCTCTCTCCTCTCCT
CTCCTCTCCTCTCCTCCCCCCTTTTCTTCTTTTTTTACTCTCTTTCCCTT
CTCCCCCTTGTTTCTTCCCCTTTCTCTCTTTTCTTTTCCTTTCTCCCCAT
CTCTTCCCCTCTCCCTGTCCTCTCCTTCTTTTCTCCTGTCTTCCTTCATC
TCCCCCCCCCTCTTTTTCTTTCTTTTTCTATCTTCCCTCCTCTTATCTTC
CCCCCTTCCTCTCTCTCTTTCTTTTTTTTTCATTCTCTATTTCCCCCTTC
TCTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_o13.g1 MSMg01no442_o13.g1 CHROMAT_FILE:
MSMg01no442_o13.g1 PHD_FILE: MSMg01no442_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:19 2005
         (247 letters)



>mm_chr1_166116533_166117181
          Length = 649

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctgactccttctctttgtgttca-a-attagctttatctctgacaagggtttggt 58
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 201 attctctgactccttctctttgtgttcacatattagctttatctctgacaagggtttggt 260

                                                                       
Query: 59  aaatcatggcctcctaggtgccagacacgtggctcctctggaccccacgacaatggggac 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcatggcctcctaggtgccagacacgtggctcctctggaccccacgacaatggggac 320

                                                                       
Query: 119 ataggcagcccaccagagcagtgatcactgccctttcccctgcagagggtggcggacatc 178
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 atcggcagcccaccagagcagtgatcactgccctttcccctgcagagggtggcagacatc 380

                                                                       
Query: 179 gagtagcaggccgtgtttgctgtgtttgacgagaacaagagctggtacattgaggacaac 238
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagcaggccgtgtttgctgtgtttgacgagaacaagagctggtacattgaggacaac 440

                 
Query: 239 atcaac 244
           ||||||
Sbjct: 441 atcaac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 649
Length adjustment: 9
Effective length of query: 238
Effective length of database: 640
Effective search space:   152320
Effective search space used:   152320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)