Query= MSMg01no442_p20.b1 MSMg01no442_p20.b1 CHROMAT_FILE:
MSMg01no442_p20.b1 PHD_FILE: MSMg01no442_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:26 2005
(435 letters)
>mm_chr1_114284324_114285160
Length = 837
Score = 756 bits (391), Expect = 0.0
Identities = 422/433 (97%), Gaps = 2/433 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggagctatgggagtgtgacaccacacctggggaaaccattgtactaagagtga 64
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 637 gaattcgggggctatgggagtgtgacaccacacctggggaaaccattgtcctaagagtga 578
Query: 65 agatttggaaattgatttttttagttcaaaaaa--atatagccatttcattcaatagggg 122
||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 577 agacttagaaattgatttttttagttcaaaaaaatatatagccatttcattcaatagggg 518
Query: 123 ctttaaaagagtccctacttagctgaatcaatatacacagtgtatgtagctacagcaaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctttaaaagagtccctacttagctgaatcaatatacacagtgtatgtagctacagcaaaa 458
Query: 183 tatcgaaataatgaccagagaaaataaatatcaaaacctcaaactaatggaacaaacaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatcgaaataatgaccagagaaaataaatatcaaaacctcaaactaatggaacaaacaac 398
Query: 243 ccaaatgccaaagtaaacaaaacccaaaccaaaaaccacacgaataaaaaatttaagtta 302
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccaaatgccaaagcaaacaaaacccaaaccaaaaaccacacgaataaaaaatttaagtta 338
Query: 303 agcagtattcgcttgctgaactttagcgacactgaacttcagcatgtggtcagcattgga 362
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 337 agcagtattcgcttgctgaactttagtgacactgaacttcagcatgtggtcagcattgga 278
Query: 363 gacaaagtagagaagcaatttcagatgtaatagaccatcaaggcaagtgtcgcagtgcct 422
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 277 gacaaagtagagacgcaatttcagatgtaatagaccatcaaggcaagtgttgcagtgcct 218
Query: 423 ctttggggtctgt 435
|||||||||||||
Sbjct: 217 ctttggggtctgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 837
Length adjustment: 9
Effective length of query: 426
Effective length of database: 828
Effective search space: 352728
Effective search space used: 352728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no442_p20.g1 MSMg01no442_p20.g1 CHROMAT_FILE:
MSMg01no442_p20.g1 PHD_FILE: MSMg01no442_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:26 2005
(482 letters)
>mm_chr1_114145467_114146348
Length = 882
Score = 882 bits (456), Expect = 0.0
Identities = 476/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 1 tgtggaattaggcaacccaacttttccaactctgtgacatataaaactcatacttattga 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggaattagccaacccaacttttccaactctgtgacatataaaactcatacttattga 260
Query: 61 aaaaagaattttctccttacataaatctttcctaggcacatagcctatatttctatcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagaattttctccttacataaatctttcctaggcacatagcctatatttctatcata 320
Query: 121 actatatgttaggatgcttgttgcaacttatactttaccagcagaggttgatgtaatgat 180
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actatatcttaggatgcttgtcgcaacttatactttaccagcagaggttgatgtaatgat 380
Query: 181 gtgaggcaaggtcttgaaacaatgtccaaaatgcgttgtattacctagtacataatttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaggcaaggtcttgaaacaatgtccaaaatgcgttgtattacctagtacataatttaa 440
Query: 241 atttctattattgtgataaaacattatgattagaacaactttaaaaaaaa-gaatatatt 299
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 atttctcttattgtgataaaacattatgattagaacaactttaaaaaaaaagaatatatt 500
Query: 300 tgagcttttggtttcagagagaggagttgaatccatgatggtggagttaaggcaatgggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagcttttggtttcagagagaggagttgaatccatgatggtggagttaaggcaatgggt 560
Query: 360 agcagatatggaagctagaacagaagttaaacttgaactgaattgttgaatttgatatgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcagatatggaagctagaacagaagttaaacttgaactgaattgttgaatttgatatgt 620
Query: 420 cctgaattccaagcagganacagagagaaaaatagaaatgattggattcctcaaactcta 479
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgaattccaaacaggaaacagagagaaaaatagaaatgattggattcctcaaactcta 680
Query: 480 caa 482
|||
Sbjct: 681 caa 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
