BAC Information

Click to search

BAC

Clone NameMSMg01-443E07
Chromosome1 (Build37)
Map Location 61,948,094 - 62,097,444
singlet/doubletdoublet
Overlap genePard3b
Upstream geneRpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443E07.T7 (MSMg01no443_e07.b1)MSMg01-443E07.TJ (MSMg01no443_e07.g1)
ACCAG532715AG532716
length724733
length of high quality
(start - end)
233 (84 - 316)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no443_e07.b1 PHD_FILE: MSMg01no443_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:49 2005CHROMAT_FILE: MSMg01no443_e07.g1 PHD_FILE: MSMg01no443_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,948,094 - 61,948,326)(62,097,201 - 62,097,444)
sequence
NCCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGTACCGCC
GCGGNAANCAGGGNCTTACANCAGCATATAGNTTGCATGCTTCCCAAGCC
AGGGCAGGGGCTTTGTTATTGTATCCTTTATGTTTTTACATAATGTCTTA
TAGTGTTCCACACATGTTATATGCTGTCTTCTTATTGGTGGCTTGGTTAT
TATGACTGTTGCACAAATTGCACTGAGTGCTGTACAAGGAATCACATTGT
TTTTATCTGGTGAATTAGGAGACAGCAGTGCAGAAGTTCTCCTGTAAAAA
TAATTGTGTGGGGGAGGTTTTTCTACTTCCTTCACNTTCAAANAATTTCT
GGGTATTTCTATATATTCTCTACCTCATTTTAGCTCCTGAATAAAGAGCT
GGTATTTTTATTAACAGGCTGCAAGTCTAAGCTGGGAAGGTTTTGAGCTA
TTCTATCCTACCTAGGTTGATAATACCAGATAAATGCCTCATTATATGCA
AATCTGGTCTTGTCCTGGCTCGCTCTGGCCCATGCGTGTCCTCAAGCCTT
CTCTTTCAACATGACCATATTGTGCATCCCCCTGTTCTCTTCCTGTGTTT
TCTCTACCTTCTCTCTTGAGGCCCCTTCTCTTATTCTGTTAACCCCCCCT
CTTTTTTTTCAACTGGATGCCCATATCCTTGCTTTTTCTGTCCTCTTTTT
CCCATACCTTTTCTTTTTCTTCTC
ATACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAATGGCGGGGTTTTCCCTAA
ATGCCAGTGAGAACCTGTCTTCATTTGTGAAATTCTAAGAGGAATTTAGA
AACAGAAGAACTCTTTAATCCAATTCAACAACTGTGTACTGTGTGTTGTG
CACTGGTTCTATTTCTGGTTTTATGGGTAACATTAAGTAAGACAAACCCA
TTCCTTCTCCTCAAGGAACACACTGGGATACTTGAAACCACACATAAAAT
AATGCAAGCAATCTGTGATATTTTTATGGCCCACTAACAGTCTGAGTAAT
GCGGATCTCCTAAGTGCTATGCAAGAGTAAAGAAGATTCTGTTGACTGTC
TGTGGCCCCAGGGACCTGATGCCACCTATCCTTGAGAGCAGAATCTATAT
AAATGGAAATTACAAGCCTCTGATATAAAGCGAACTATATAATCAATGGA
AGATGCAGGAAAATATGGTTGTGAATGCGAATAAAGAGCAGTATCTGTGT
AGTAACGCCATAACTAATAGTATGGTTACTCTAAACACTTCTCAGCATAT
GGAACAGGTATCTGCACCCCACTAACCGGGTTGTAATTTAAACAACAATC
TGTTTTCTTTCCCCCCACTTCTTTCTTTGTACACTATTTGCACTTGTACC
TATATCCTCTACCTGTTTTAACCTTTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_e07.b1 MSMg01no443_e07.b1 CHROMAT_FILE:
MSMg01no443_e07.b1 PHD_FILE: MSMg01no443_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:49 2005
         (233 letters)



>mm_chr1_61947894_61948526
          Length = 633

 Score =  412 bits (213), Expect = e-120
 Identities = 228/233 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatgcttcccaagccagggcaggggctttgttattgtatcctttatgtttttacataa 60
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 201 tgcatgcttcccaagccagggcaggggctttgttaatgtatcttttatgtttttacataa 260

                                                                       
Query: 61  tgtcttatagtgttccacacatgttatatgctgtcttcttattggtggcttggttattat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttatagtgttccacacatggtatatgctgtcttcttattggtggcttggttattat 320

                                                                       
Query: 121 gactgttgcacaaattgcactgagtgctgtacaaggaatcacattgtttttatctggtga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 321 gactgttgcacaaattgcactgagtgctgtacaaggaatcacattgtttccatctggtga 380

                                                                
Query: 181 attaggagacagcagtgcagaagttctcctgtaaaaataattgtgtgggggag 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaggagacagcagtgcagaagttctcctgtaaaaataattgtgtgggggag 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no443_e07.g1 MSMg01no443_e07.g1 CHROMAT_FILE:
MSMg01no443_e07.g1 PHD_FILE: MSMg01no443_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:49 2005
         (244 letters)



>mm_chr1_62097001_62097644
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaatggcggggttttccctaaatgccagtgagaacctgtcttcatttgtgaaattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgagaatggcggggttttccctaaatgccagtgagaacctgtcttcatttgtgaaattct 385

                                                                       
Query: 61  aagaggaatttagaaacagaagaactctttaatccaattcaacaactgtgtactgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaggaatttagaaacagaagaactctttaatccaattcaacaactgtgtactgtgtgt 325

                                                                       
Query: 121 tgtgcactggttctatttctggttttatgggtaacattaagtaagacaaacccattcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgcactggttctatttctggttttatgggtaacattaagtaagacaaacccattcctt 265

                                                                       
Query: 181 ctcctcaaggaacacactgggatacttgaaaccacacataaaataatgcaagcaatctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcctcaaggaacacactgggatacttgaaaccacacataaaataatgcaagcaatctgt 205

               
Query: 241 gata 244
           ||||
Sbjct: 204 gata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)