BAC Information

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BAC

Clone NameMSMg01-443G12
Chromosome1 (Build37)
Map Location 150,878,839 - 150,879,124
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443G12.T7 (MSMg01no443_g12.b1)MSMg01-443G12.TJ (MSMg01no443_g12.g1)
ACCAG532820AG532821
length741731
length of high quality
(start - end)
245 (79 - 323)286 (135 - 420)
definitionCHROMAT_FILE: MSMg01no443_g12.b1 PHD_FILE: MSMg01no443_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:00 2005CHROMAT_FILE: MSMg01no443_g12.g1 PHD_FILE: MSMg01no443_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGTGGCATACTGAATGGCTGAGAAGCACCTGAAAAAA
AAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAAATTCCACCTCACACCAATCAGAATAGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAAAAAGAGGTACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTATACAACCACTCTGGAAATCAGTCTGGCTGTT
CCTCAAAAAATTGAACATAGTTTTTTTTTGAGGATCCCACAATAACTCTC
CTGGGCATATATCCATAAGATGTTCCAACCGGCAAGAAGGACACATGCTC
CACTATGTTCATAACAGCCTTATTCATAATAGTCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGACACCGATTATGTGGTACATTTAC
ACAATACAGTACTACTCAGCTATTATAAAGAAAGAATTTATGAAATTCCT
AGGCAAACGGATGGATCTGGTAGGTATCCTCCTGAGCGAGGTAACCCAAT
CCCCAATGAACTCGCACAAAATGTACTTTACTGGACAAGGGGACATTACC
CTCAGATTTTTTTAACTCCCCCGCATATCACTAAACCACTTTGTTCAACT
TTTTTGGATATTGCAACTAAAAATCCACTATCTTTATTGCG
TTTACCATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGCGACAATCTATGGACAATATGAACTANATGTGG
GTGCTAAAGGCTTCAAAACCACTTCAAATACAAAATCCATCAGCTTTGAC
TCTCATTCTGTGGGAACTAAGGAGACGTGTGATGATTGGAACAAGGAATT
CATTATCTAACCCCTAACATTTCACCACTTCCAAAACAAAAACCCAAAAC
TAACTAGCAAGCAAGACAAACAGAAAGGAACAAAAGCCAATGAGAATAGA
CCAAAGAACAGCAGAGAATTCTATTTGTGATGAACTGAAACAACCAAGTC
CAGAGCATTCTTCTTGTATCTAAAGAATCAAAGATCCAGAGAGAAAGGAA
AAACATGTTGCCCAGAGACGCAAGTTGGCTTCTGTGTTTCAGAGTGTCGG
TAACGTCAACAGCCACAGGAAAGCTTGTTTGGAGATGAGGATGCCAGGAA
CGATGGGGATGCTGATTGACCCTGAAACATTTCAGGGCTGATGGCGCCAC
TGGATGATTTGAATGCGAGGGTGCTTATACAAAGCATCACCATGCTCACC
GCTGCCGCTGCTTTTAGTTTGTCTTCGCCCTTTTTTGGTTTTGCTATGTT
TTATTTTTTCCTTGGGCCCTCCCTTTCTTCCTTACTTTTTTACTCCTCTT
GAAACCCCCTATTCTTCTGTCCTATCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_g12.g1 MSMg01no443_g12.g1 CHROMAT_FILE:
MSMg01no443_g12.g1 PHD_FILE: MSMg01no443_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:00 2005
         (286 letters)



>mm_chr1_150878639_150879324
          Length = 686

 Score =  495 bits (256), Expect = e-144
 Identities = 279/290 (96%), Gaps = 8/290 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccatcagctttgactctcattctgtgggaactaaggagacgtgtgatgattggaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccatcagctttgactctcattctgtgggaactaaggagacgtgtgatgattggaacaa 260

                                                                       
Query: 61  ggaattcattatctaacccctaacatttcaccacttccaaaacaaaaacccaaaactaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ggaattcattatctaacccctaacatttcaccacttccaaaacaaaaacccaaaacaaac 320

                                                                       
Query: 121 tagcaagcaagacaaacagaaaggaacaaaagccaatgagaatagaccaaagaacagcag 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaagcaagacaaacagaaaggaacaaaagccaatgagaatagaccaaagaacagcag 380

                                                                       
Query: 181 agaattct----atttgtgatgaactgaaacaaccaagtccagagcattcttcttgtatc 236
           ||||  ||    ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaa--ctcagaat--gtgatgaactgaaacaaccaagtccagagcattcttcttgtatc 436

                                                             
Query: 237 taaagaatcaaagatccagagagaaaggaaaaacatgttgcccagagacg 286
           ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 437 taaagaatcaaagatccagagagaaaggaaaaacacgttgcccagagacg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)