Query= MSMg01no443_h04.b1 MSMg01no443_h04.b1 CHROMAT_FILE:
MSMg01no443_h04.b1 PHD_FILE: MSMg01no443_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:03 2005
(243 letters)
>mm_chr1_165842020_165842661
Length = 642
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%), Gaps = 1/243 (0%)
Strand = Plus / Minus
Query: 1 taaaacaagtcctcaagcaacattcactaaggatctcaacttgcgatgattcggggggaa 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 442 taaaacaagtcctcaagcaacattcactaagaatctcaacttgcgatgattc-gggggaa 384
Query: 61 acaaaatctgagaagcacgggtgacgctggacatgcagcacagtgcagggaaatggcagc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 383 acaaaatctgagaagcacgggtgacgctggacatgcagcatagtgcagggaaatggcagc 324
Query: 121 cacacgaagcctcgggacacccaggttccgggccacaggggacattcctggggaaaggga 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cacacgaagcctcggcacacccaggttccgggccacaggggacattcctggggaaaggga 264
Query: 181 agtcaggcacctacctcggctgcttgaggcttacttagtgcacacttgcaaagcactttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtcaggcacctacctcggctgcttgaggcttacttagtgcacacttgcaaagcactttg 204
Query: 241 aaa 243
|||
Sbjct: 203 aaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space: 148122
Effective search space used: 148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no443_h04.g1 MSMg01no443_h04.g1 CHROMAT_FILE:
MSMg01no443_h04.g1 PHD_FILE: MSMg01no443_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:03 2005
(183 letters)
>mm_chr1_165659035_165659617
Length = 583
Score = 346 bits (179), Expect = e-100
Identities = 182/183 (99%)
Strand = Plus / Plus
Query: 1 tctttctgcttgaccctcatcttttcaacttataatttttctttgaatgtataaacagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttctgcttgaccctcatcttttcaacttataatttttctttgaatgtataaacagta 260
Query: 61 aagaccaagaaagaaggtgtatagttaggagatttatactaagaaatttgccttgaaagc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaccaagaaagaatgtgtatagttaggagatttatactaagaaatttgccttgaaagc 320
Query: 121 tcctactctgtggcaggtaaaatagatgaagtttctgttggattcttttctcaaaaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctactctgtggcaggtaaaatagatgaagtttctgttggattcttttctcaaaaaaac 380
Query: 181 aaa 183
|||
Sbjct: 381 aaa 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space: 100625
Effective search space used: 100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
