BAC Information

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BAC

Clone NameMSMg01-443J18
Chromosome1 (Build37)
Map Location 74,794,427 - 74,968,339
singlet/doubletdoublet
Overlap genePrkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1
Downstream geneIhh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443J18.T7 (MSMg01no443_j18.b1)MSMg01-443J18.TJ (MSMg01no443_j18.g1)
ACCAG532975AG532976
length715730
length of high quality
(start - end)
159 (76 - 234)197 (122 - 318)
definitionCHROMAT_FILE: MSMg01no443_j18.b1 PHD_FILE: MSMg01no443_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:15 2005CHROMAT_FILE: MSMg01no443_j18.g1 PHD_FILE: MSMg01no443_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,794,427 - 74,794,584)(74,968,145 - 74,968,339)
sequence
CGNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAAACTGGC
GGAATTCCTGCTGATACCGACAACATAACTGACCTTGGCCTCACCTTCTC
CCAAACCTGGTGGTTCTGCTTCCTCTACGGCCTCCTGTCTCGTCCATCTG
GAAGCCTTGACTCCCCGTATGGCACAGGTTCTTTCTGAGCTGGTGGCCAC
AGCTGGTGAGGGCCATGAGTTTTCTCCTTGTTCNTAAGAAAGNNTCCATC
TCTGGAATTATGAAAGGAATCTCTTTGACTAGTAGGAAATGATACAACAA
AACCAAGTCCCATGTCATTACTGATTTTCTTGTTAAGCNTTTCAAAGCCC
CCCTCCCCCAAAAAATTTTTTTGGTTTTTTTTAACTCCATTGGCCAAATC
TTTCCCCGGAAACCTAATTTTCAAAGGGGGAAAAAAAATTCCCAATTTTA
TCTTTTTTNGGNTCCCNNNNCNCTCTGGAAGGGTTTACCNNATTATTCCA
TGAAAATTTACCCCCCCCGGATTCCCGGTTTCCCTCGCGGGTTTTCTTTC
CCACATCTCCTCTTCTTCCCCAAAGCGGAGGAGNTTATTCACCCCCGATA
TATCCCCCCGCCATTCTTCCTTTGGACCCATTCTAACATTCNTTTTACTC
CCGAAAACACACNAACTAGAGCTCCCTGAAGACTTTATCTTGTCCTACCT
TTACTTCCCCCCCCC
TCACATGATGTGGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGCTGGCTGTGCCGTATGCAGAGATCTT
GGCTCTCCTTGGAGACAGCATCATCCAAACCTGGGTGGGCCCCAAATGTG
TATCTAGGGACGGAGAACTGAGGAAGGACGCCTTTCCCTCTTATTCTCCC
CACCTCCCAGACGTTCCCAGCAGTGTCTCCTGGAAAACCCTCCTACAGAA
GCCTGTTTTTGGTCAACAAAGGCTCCATGCTCATGACCTTCAGCCTGGTC
CCCAATAGCAGCTCGGTATTTTATTCTGAGGCCCTCCTCTGGCCTCATCA
GTCCTGGAGTCCACCAGGTCTTCCTTATAAGCACATACCCCAAGGGCACC
TCATGGAGGCAGCACATTTTCTACCTGAACTTCAACTTTTATCCCCAGTA
CCTCAAGGTAGGAGGTAGGGGCAGAGGAACTGGGCCTTTACTGGGTCTTC
ATGCCTCCACGACCTGGCACTTTTTTTTCAAAACCACATTCTTAGCGCCC
GCGCCCACCTATGGTGGGACGCTAGCCGCTCCTTTTTTCTTTTTCCCCTC
TCTCCTCCCCCCCCCTTTTATTTCTCTCTTTTTTACCCCCTCGCGTTTTT
TTTTTTTTTTCCTTTTCTCCCCCCCTTTCGCGCGATTGTTTATCTTTTAT
TTCCCCCCTTTTTCCGCCTCTATTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_j18.b1 MSMg01no443_j18.b1 CHROMAT_FILE:
MSMg01no443_j18.b1 PHD_FILE: MSMg01no443_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:15 2005
         (159 letters)



>mm_chr1_74794227_74794785
          Length = 559

 Score =  306 bits (158), Expect = 6e-88
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactgaccttggcctcaccttctcccaaacctggtggttctgcttcctctacggcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactgaccttggcctcaccttctcccaaacctggtggttctgcttcctctacggcctcc 260

                                                                       
Query: 61  tgtctcgtccatctggaagccttgactccccgtatggcacaggttctttctgagctggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctcgtccatctggaagccttgactccccgtatggcacaggttctttctgagctggtg 320

                                                 
Query: 121 gccacagctggtgagggccatgagttttctccttgttc 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacagctggtgagggccatgagttttctccttgttc 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no443_j18.g1 MSMg01no443_j18.g1 CHROMAT_FILE:
MSMg01no443_j18.g1 PHD_FILE: MSMg01no443_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:16 2005
         (197 letters)



>mm_chr1_74967945_74968541
          Length = 597

 Score =  369 bits (191), Expect = e-107
 Identities = 194/195 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccaaacctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 catccaaacctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgc 336

                                                                       
Query: 61  ctttccctcttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctttccctcttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccct 276

                                                                       
Query: 121 cctacagaagcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 275 cctacagaagcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggccc 216

                          
Query: 181 ccaatagcagctcgg 195
           |||||||||||||||
Sbjct: 215 ccaatagcagctcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)