BAC Information

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BAC

Clone NameMSMg01-443K13
Chromosome1 (Build37)
Map Location 87,501,952 - 87,502,145
singlet/doubletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K13.T7 (MSMg01no443_k13.b1)MSMg01-443K13.TJ (MSMg01no443_k13.g1)
ACCAG533013AG533014
length725736
length of high quality
(start - end)
195 (127 - 321)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no443_k13.b1 PHD_FILE: MSMg01no443_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:19 2005CHROMAT_FILE: MSMg01no443_k13.g1 PHD_FILE: MSMg01no443_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCATCTTXXXXXXXXXXXXXXXXXXXXXXXXXATATTTCGAAAACCGCGG
AATTCATAGCGTGTTTCAGAATAACCTTCGCTAGCCTGAGTAGAGATTTA
ATAATGTATTGATCTTTCTTAAGGACGTGAGCATAATGCCCACTTCTTTT
AATTCTATGGATTTCTACTTTAATTTCATTGAATCTTTGTCTTCATTGGG
ATGAAATCACTCCTCATAAGATTGTTCATTTATGCCTCTCTTACCTTCCG
ACACTTACAAAGCTGTATGTTTCCCCTTAGCCACTGCCTTTGCTGTGTCT
CAGATTTAATAATTTTTAGATNNCTGNGTTTTTTTAGCGTAGGAGAAAGG
GTCACACTTTTGCTTGTCTTACCCCATATAAAAAAATTACATTCATTTAT
TTATTGTATGTGTGCAGGTGCCCCAATGTGTCTTTTGAGATCAGAGGACA
ACTTTGGGGAGCTGGTTCTCTCCTACTACCGTGTAGCTAGTTCTTATGGG
AGCAAGCTCATGTCCACAGACTTGGTGGCAAGGCCTGTATCAGTTGAGCC
ATCCTCCCAGACCCTCTTTTATTTACATTAGCTACAGTTTTTACACGTAC
TCTGTTTTATAATTGTGCTATCACCAAATTATCCACATTTTGTACCACTA
CGTACTCTTAGAAATACTTACCATGTTTGCACATATCTTTCACTTTATTC
TCCTCTTACTTTTGGCTTCACTCTC
CTTCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGCCGAAATACTACCTTCTTGTGGCCATCTGAGGGAC
AGCCATGAGACATGCTTGAGGACTGGGCTGGGTGAGTGAGTTGGAGAAGG
GAAGTAGCCAAGGTGACAAGGCCAACCGTTCTGTGCCCAGGGCCATTTCT
GCCTTCAGAAGTCGGTCCTTCTGCATCAGTCTTGGTGGTTTGCTGTATCA
CCTGACTGCTGGACCACTTTCCTTCCCAGGTTCTTCTCCCCCTCCACATG
CAACCGATGGAATTCCCCATGTTTTTTTTCTTAGCTACAGTCTGTCCAGA
TGACTAGAGTCACTCTCCTGCTGCAGTTTCCACCTGTGTCCTTAGCTTCA
TGTGCCTCGCCTCTCCTTAGCTCCTCGGGTTCTAATGCTCAGCCACATCT
CCTCTGGAATCCACCCTCCAATCACCCTTTGCTCCTTCTTTGGAACTTCC
ATTTTATATAACAGGCTCCATACGCCACATACCTGGGGCTTCAGCCTCCC
TTTGTCTTATCTCTCACCTTCTCAATCATCCTATCGTCAGTTCCTATGGA
TACTCACTTTTAGTTTACCTCCATTTTTCCCGCTCCACTTATGGCCCCCC
CATATTTTTTTTTAGCCCGGTTTTTTTTTTTCTCCCCTGCTCCCCTTTTC
CCTATTTTTTTTTCCTGTTTTCCCTTTCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k13.b1 MSMg01no443_k13.b1 CHROMAT_FILE:
MSMg01no443_k13.b1 PHD_FILE: MSMg01no443_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:19 2005
         (195 letters)



>mm_chr1_87501752_87502346
          Length = 595

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcataatgcccacttcttttaattctatggatttctactttaatttcattgaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgagcataatgcccacttcttttaattctatggatttctactttaatttcattgaatct 260

                                                                       
Query: 61  ttgtcttcattgggatgaaatcactcctcataagattgttcatttatgcctctcttacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ttgtcttcattgggatgaaatcactcctcataagattgttcatttatgcctctcttagct 320

                                                                       
Query: 121 tccgacacttacaaagctgtatgtttccccttagccactgcctttgctgtgtctcagatt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccgacacatacaaagctgtatgtttccccttagccactgcctttgctgtgtctcagatt 380

                         
Query: 181 taataatttttaga 194
           ||||||||||||||
Sbjct: 381 taataatttttaga 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)