BAC Information

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BAC

Clone NameMSMg01-443M24
Chromosome1 (Build37)
Map Location 117,360,767 - 117,361,069
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443M24.T7 (MSMg01no443_m24.b1)MSMg01-443M24.TJ (MSMg01no443_m24.g1)
ACCAG533129AG533130
length783760
length of high quality
(start - end)
304 (80 - 383)337 (78 - 414)
definitionCHROMAT_FILE: MSMg01no443_m24.b1 PHD_FILE: MSMg01no443_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:31 2005CHROMAT_FILE: MSMg01no443_m24.g1 PHD_FILE: MSMg01no443_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAACTTGTTCTACATGTCANTAANANGANTCANTATATTTCAGAGAA
TCCGCGGAATTCANGGTNTTTTTCTATCACAGTATGCCTAACACTATAAC
ATGATATGATTTTNGGGGGGCTCCTCTTCCCCAAAACATAAAAGTAATAA
ACAGAAACTAAGACAACAAAAAACCAAAAATCTCATCATGAAAGCTGCAG
TGTGTCTTTTATTATAATTTTAAGAACACTAAGAAAATAGTAGATGCAAC
AAATCTCTGACTGGTTTAGTGGCTGCTCAAACATAGCACACTCTTATTAC
TAAAAGCTCTGAAATCCTGCAAATTATAGCAACAATCATCTAGCATTACA
CCCAACTTCTAAAAGGGCAGATTTTTATTTTTAAGTTGAGCTAAATTCTA
TTGAACTTTTACAGAAAAAATGGACCGCAAAGTATTCCCGCAAGCACAAC
ATGAAATGATTCTGCAACATACCGCCTTTTAAGAATATTTTGAACACACC
GTATATATACTTCCTCCTAAAATATGCGTTATTTAACCCCCTTTTTTTGA
ACAATATTTTCTGACCACTGTAAAAAACGTATCAAATTGGTTTTAAAAAT
ATATACGGTCCTCTACCACCCTGTTCGAATCCACTCATTTATATATTCTC
ATAAATTAAATAAATGTCTCCACAAAAAACACAACCCTTAACTTTTAAAT
TTTACCCATTACACATTTCGGTAAACACATTTCTATTACATATTAATTTG
TTCACTCCGGATTATTATAAATTATTGTATCCG
TTCCGATGCTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTGTACTCCATT
TTTTAATATAACCATATTAAAAAATTTGGTTTTCTGGAGTCCAACTTCTT
AAGATCTTTATATATATTGGATATTGGACCCCTATCAAATTTAGGATTGG
TAAAGATCTTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTG
TTCTTTCCCTTACAGAAGTTTTGCAGTTTTATGAGGTACCATTTGTTGAT
TCTTGATCTTACATCACAAGCCACTGCTTTTCTGTATATGACCAAACAAG
AGCATGTTTGACTCACTGTTGTTTACAAACCAGAACTACTAGAGAAAGAA
AGAAAGAAAGAAAGATTGAAAGAAAGATAGATAGAAAGAAAGAAAGAAAG
AAAGAAAGATAGAAAGAAGGACAGATTGAACGAGAACAGATTAGATAAAG
ACCATAGAGGACAGGAGAGGAGAGGAGAACACAACACAGGATAGCAGAGA
ATGATAGCTCCCCTCCTTTTTTCTTTTTTCCCCTTTTCTCCCTTGTCCTA
CCCATATTTCCTCACCCACCCCTTCACTCTCTTTTTTTATTCCCCCCCCC
TTTTCTTTTATTTTCTTCCCCCCCCCAATTTACCCTCTCCCTTTCCCTTT
GTTCTTTTTTTCTTTTCTTTTTTCTCCTTTCCCCCCTTCTCTTTTTTCCC
TTTCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_m24.b1 MSMg01no443_m24.b1 CHROMAT_FILE:
MSMg01no443_m24.b1 PHD_FILE: MSMg01no443_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:31 2005
         (304 letters)



>mm_chr1_117360567_117361269
          Length = 703

 Score =  526 bits (272), Expect = e-154
 Identities = 296/304 (97%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtatgcctaacactataacatgatatgattttnggggggctcctcttccccaaaacat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 503 cagtatgcctaacactataacatgatatgatttt-ggggggctcctcttccccaaaacat 445

                                                                       
Query: 61  aaaagtaataaacagaaactaagacaacaaaaaaccaaaaatctcatcatgaaagctgca 120
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaaataataaacagaatctaagacaacaaaaaaccaaaaatctcatcatgaaagctgca 385

                                                                       
Query: 121 gtgtgtcttttattataattttaagaacactaagaaaatagtagatgcaacaaatctctg 180
           |||||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||
Sbjct: 384 gtgtgtcttttattataattttaagaacactaaggaaataggaggtgcaacaaatctgtg 325

                                                                       
Query: 181 actggtttagtggctgctcaaacatagcacactcttattactaaaagctctgaaatcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actggtttagtggctgctcaaacatagcacactcttattactaaaagctctgaaatcctg 265

                                                                       
Query: 241 caaattatagcaacaatcatctagcattacacccaacttctaaaagggcagatttttatt 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 caaattatagcaacaatcatctagcattacacccaacttctaaaagggtagatttttatt 205

               
Query: 301 ttta 304
           ||||
Sbjct: 204 ttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 703
Length adjustment: 9
Effective length of query: 295
Effective length of database: 694
Effective search space:   204730
Effective search space used:   204730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)