NNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCAACTTTCTTCTAATATGCAATGCAGCCTACTAAAGAAA
TGCTGTGGGCACATTTAATATTTAATTATCATTGATCATAATTGATAACA
ATTATAAAAGCTTTATTTTCTGCAAAGCCTTTTATAGTATACTAAAACCC
TAAGTATTAAAAAGATATTGGTTCTGAATCTTTTCTGGAGCAACAGCTAC
TCCCCAGAACTTAAAAGGTCCTTGTATGAGAGGAAGGATTTAAAGTAATT
ATCCTCCTTTGCATAGTCCTTTTTTACAAAATAAAACCACTGACTCTAAT
TTGTGCTGGCCATATCTTCCTGGGTTTGGGGCCACCTAGTGGAGTACAGT
TGACCCAGGGGACACACCCTTGAAGATTACACTTTCTGAACCAGTCATCA
ACTGTCCAGAGCTTCCTAGTTAGGGTGAGGGACTTGTAAAACCCTGTCCC
CTTTGTTGATAGAAAGTTTACTACAAAACCAATTTCTTTTTCCCTTTTCT
CCTCTTTTCCAAAAGCCAAGGATTTTAATAGGAAAAAATTCACTGTCAGA
ATTTTTTAAATATTCATACCGACAATAATTTTTCTCCCCACGCGGAAAGA
AATGGCAGCCTATTCTTGGACAAAATTTTTACCCCACCCATGGGTTTCCT
TTTAAAATAGAACGGGACCTCTTTCCAAATGAAGGCCCCCCTTTCACCCA
CATTTTTTTTTTTTTTATTGTAAAGA

NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATCCCTGTCCTTGTGCAAGC
TGGCATAGATTTTCTATTTGAACATTTTCCTTATTGAATTTTACTAAACG
AAAAGTGCACGGTCATGTTCTTAAAATAACTATATCCAAACTATCTTAGG
TAGTTGCTGTCCTTACTACATGTATATGTGAAATTTTGTAGAACTAATTT
TCAAAGCCCTAAAATAAGTAACATAATGCACATTGTGGTTTAGATCAGAC
TTACAAGGTTTTTTTGTGTTATATTCTAGAAAGAAAATTTTGCCATGATA
GAGTTAAGATTTTATTTAGCATTATGTATTTATCAACTGAATGCAAATTT
TCTCACTTAATTCTAAGGTATTTAGGTAAAAGGTATTTGGGATAGTAGAG
CAGAAAAAGATAATATTTGAACGTCAGNTATTTGTTTGTATCTAATTCAT
TTAATTCCCACCATAAGTTAGTGAAAAATATATACTCCATATTGCACAGG
TGGGAAAGACTGACCTGTANAATAAATATTGTATGAGTACATAGTTGGGC
AAGATGCAAAACAAGCTCTCCCAACATTTGTCTACCTTTCCTCTCTCCAC
CCCAAAGCCTTATGAAAGCTTTCCTAATGGGGAAATGTCCTGTAGGAACC
TATTAAATCTACCTGGCCCTTACCCTTGGAAAAGGGGGAAAATCCGTCAC
CTACCTTAAA

Query= MSMg01no443_n23.g1 MSMg01no443_n23.g1 CHROMAT_FILE:
MSMg01no443_n23.g1 PHD_FILE: MSMg01no443_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:36 2005
         (433 letters)



>mm_chr1_45959178_45960010
          Length = 833

 Score =  746 bits (386), Expect = 0.0
 Identities = 421/433 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttatccctgtccttgtgcaagctggcatagattttctatttgaacattttccttattg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttttatccctgcccttgtgcaagctggcatagattttctatttgaacattttccttattg 574

                                                                       
Query: 61  aattttactaaacgaaaagtgcacggtcatgttcttaaaataactatatccaaactatct 120
           |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 573 aattttactacatgaaaagtgcaccgtcatgttcttaaaataactatatccaaactatct 514

                                                                       
Query: 121 taggtagttgctgtccttactacatgtatatgtgaaattttgtagaactaattttcaaag 180
           ||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 513 taggcggttgctgtccttactacatgtatatgtgaaattttatagaactaattttcaaag 454

                                                                       
Query: 181 ccctaaaataagtaacataatgcacattgtggtttagatcagacttacaaggtttttttg 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccctaaaataaataacataatgcacattgtggtttagatcagacttacaaggtttttttg 394

                                                                       
Query: 241 tgttatattctagaaagaaaattttgccatgatagagttaagattttatttagcattatg 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 393 tgttatattctagaaagaaaattttgccatgatagagttaatattttatttagcattatg 334

                                                                       
Query: 301 tatttatcaactgaatgcaaattttctcacttaattctaaggtatttaggtaaaaggtat 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tatttatcaactggatgcaaattttctcacttaattctaaggtatttaggtaaaaggtat 274

                                                                       
Query: 361 ttgggatagtagagcagaaaaagataatatttgaacgtcagntatttgtttgtatctaat 420
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 273 ttgggatagtagagcagaaaaagataatatttgaacatcagttatttgtttgtatctaat 214

                        
Query: 421 tcatttaattccc 433
           |||||||||||||
Sbjct: 213 tcatttaattccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)