BAC Information

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BAC

Clone NameMSMg01-443O02
Chromosome1 (Build37)
Map Location 148,303,672 - 148,303,837
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571
Downstream geneB830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443O02.T7 (MSMg01no443_o02.b1)MSMg01-443O02.TJ (MSMg01no443_o02.g1)
ACCAG533181AG533182
length754734
length of high quality
(start - end)
166 (82 - 247)242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no443_o02.b1 PHD_FILE: MSMg01no443_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:37 2005CHROMAT_FILE: MSMg01no443_o02.g1 PHD_FILE: MSMg01no443_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCACCCTTAATTTGTGGTCGCTAAANGAATCACTATTTCTAAAGGAG
GCGNGGAATTCTCTTCTTTGCTATATAAAGTAAAACTAAGCCAGACAAAG
TCTTCAGAAACAGTAATATTGATTTGCCCGAGGAATCTTCTGTTTGAGGC
CTACAATGACTTCTGATTATAGGTACATACTGGGGATGGGAAATCATTAA
ACAAACTGTGTTTTATGATAAACAATCAATCCCACATGCTCCTGTAGAGT
AAGATACTGTATAAATAGTGAGGAAATGCTTGATAAATCATATTAGTAAT
CATACAAAAATTATCTAAAATCTTTTTCTTATTAGACTTTCATAGCTTCT
AAATCCTTCTGCTTGTATATCCTTATCCACCTGCTTCAAGTTGGATAAAC
TATCCACATAATTATTGTACCCGCTCACTTCTCTCTTGTGCTTCCTATCT
TACCCCTGTATTCCTGTCATGAACCACGATTTTTATGAGAATAATCCATA
TATAGTACTGTTACCGTCTTTTCCCGCAATTTACATATGTCGTTATTGCT
ACCCTTCTTATGATCAGTGTTCCTTACATCCCTCATTTTCATTAACACTG
TTTCCAGTAATTATTCTTCTTTTTTTCCCCACATACTTTTACCTTTAGCC
TTTCTCTTGATTATTCGCTTTCCCCACTATTCGTCCTACATCTTGTCTTA
TCCCCTCGTCTGCATTATCCCCTCTTTTTCTTTCCACTAATTCTTTGTTT
ACCA
TTTCTCGATGCAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCGCAAAATTCTTGTTTAGCTCTCTACCCCATTTT
TTTAAATGGCTACTTGTTTCTCTGGAGTCTAACTTCCTGATTTCTTTGTA
ATATTGAATATTATCCCTATATTGGGTGTAAGATTGGTAAAGATCTTTAC
CCATATCTGTTTTTGTCATTTTGTCCTATTGGCAATGTCCTTTGCCTTAC
TTAAGTTTTGCAATGTCCTGTGGTCCCACTTGTGTGTTGTTGATCTTAGA
GCCTAAGCCATTAGTGTTCTTTTTTTGAAAATTTCCCCTGAACCCATGTT
TTCAAGGCTCTTCTTCACCTGCTCTTGCATTAGTTTCAGTGTATCAGGTT
TTGATTACACGTTCTTGATGCACTTGACCTTGAGCTTTGTTACTTAAGAT
AAGAATGGATTGACCTTCATTTTTCTACATGTCGACCACCTTTAACTAGC
ACAATTTGTTGACTGCCGTGTCCTCTTTTCCTCTGTATACTCCTATTTCC
TTTTTCCCCATATTCTGTTAGCCCACCTGTTTCATTTCTGCCGCCCTTAC
TTTCTATTTTCCTTTCTCCTCCCCGTTTTTTTTTCTTTTCCTATACTTCA
CATTATCATTTTTCCCTTACCTCTCCCCCTCTTCTCTTTTTTCTTCTCTC
CTTATCCCCTTTTTCTTTTTTCCCTATTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_o02.b1 MSMg01no443_o02.b1 CHROMAT_FILE:
MSMg01no443_o02.b1 PHD_FILE: MSMg01no443_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:37 2005
         (166 letters)



>mm_chr1_148303472_148304037
          Length = 566

 Score =  267 bits (138), Expect = 3e-76
 Identities = 159/166 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaactaagccagacaaagtcttcagaaacagtaatattgatttgcccgaggaatcttct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||
Sbjct: 366 aaaactaagccagacaaagtcttcagaaacagtaatattgagttgcaggaggaatcttct 307

                                                                       
Query: 61  gtttgaggcctacaatgacttctgattataggtacatactggggatgggaaatcattaaa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 306 gtttgaggcctacaatgacttctgattagaggtacatactggggatgggaaatcattaaa 247

                                                         
Query: 121 caaactgtgttttatgataaacaatcaatcccacatgctcctgtag 166
            |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 246 gaaactgtgttttatgagaaacaatcaatcccacatgcttctgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)