BAC Information

Click to search

BAC

Clone NameMSMg01-443O03
Chromosome1 (Build37)
Map Location 72,881,685 - 72,882,008
singlet/doubletsinglet
Overlap geneIgfbp2
Upstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneIgfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443O03.T7 (MSMg01no443_o03.b1)MSMg01-443O03.TJ (MSMg01no443_o03.g1)
ACCAG533183AG533184
length770722
length of high quality
(start - end)
327 (53 - 379)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no443_o03.b1 PHD_FILE: MSMg01no443_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:37 2005CHROMAT_FILE: MSMg01no443_o03.g1 PHD_FILE: MSMg01no443_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGCTTTCCCCGTACTCACCCTTTGTCTCTGGTTTGGC
TTGCTGCGTCTTAAACCAAGAGAGCAGGGTCAAGGATGGCTATGGGATCT
GATGTAGCATTAGGTCAGTCACAAATCAGTGAAGCAAGAGGGATGCACGG
TGACCTATTTAAAGACACTTATTTATATTCAGGACACTGGTGTGCTGGTT
TGAGAGTGTGGCTGGCAGGCAAGCCTGGACATCCTCGCAGGCTTTACAGT
TCATTTTTGTTCCTCTGGGTTCTTTGTGTCAGCGTGGAGTATCTGGCAGT
GGTGCTCTGGAGACCGAGGAGCACTGCAGGAGGGTGAGGTGTAGGAGGAA
TGCTTGCTACCTTCTCTTTTTTCTCCCCCTCCCCCCTCCTTTCCCCCTTT
CTCTTTTCCCCCCCTTTTCTTCTTCCTCTTTTCTACCCCCTTCCCCTTTT
CCCCTTTCCTTTTTCTTTTTTTCCCTTCATTTTTTCCCCTTCTCCCCCTT
CTTTCACCCTTTTTTTTTTTTTCCCCCCTCTTTTTTTTTCCTCTCCCTTT
TTCCCCCTCCTCCTTTTTCTATTTATTTTCCTTTTTTTTCTCCCCCCCCT
TTCTTTTTTTTTTTTTTTTTACCCCCCCCCCCTCTTTCTTCCCTTCTCTT
TTCCCGCCTTTTTCTTCCTTTTCTTTTTACCCCTATTTTCTTCCCCTACC
CTTTCCTTTCTTCCTTCCCC
TTTTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCCGAGAAATTCATTGATGGATTAATAATTCA
TTAAGTCAGTGTCCTCGTGATCCAGCCACTTCCCAGAATCCCCACTTCTG
AACATTGCATTGGAGAACAAGCCTTCAATACATAAGGACTGGGGGAACAC
TTCACATCTAGAGCCTGAGGCAGAGAGACCACATTCCACCTCATCCAGGA
GGCACTTGAATGGTGCATTCATTCCACCTAGAATTTATAAGGACATTGGA
GACAATGGATGGGGATAGACACCTGTTACTAAACATAGAAGCAACTGAGT
CAGGACTTTCAGGCCCTCTAGCTCCCTGAAGGTCACTGTTTCCTTATGGC
CACATAAGAAACAGAGAGGTACTTTTCTCATGAGAAAAGGATCTTTTCTC
TGCCATAAGGATCCTGAGGAAGGCAAGCTCAACAATGAATTATAATCATA
TAGTCTCAGCCACCATGGCTGTGAGCCACTTTCCTTGAAAATTAAAAAGC
TATCCCAAGACCTTTCTCAAATGCCTGGTTCCTGGCCCTTTTCATGGCGG
AGTAGGGTCCCCCCCATTTACCACGGTATTGTTTCCAACCCAACACATGG
CCGGAACCCTCCTAGATTCTTCCCCCCTGTGACGTTTTCCCATGGCAACC
CCTTGGGCCCCCCGCTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_o03.b1 MSMg01no443_o03.b1 CHROMAT_FILE:
MSMg01no443_o03.b1 PHD_FILE: MSMg01no443_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:37 2005
         (327 letters)



>mm_chr1_72881482_72882208
          Length = 727

 Score =  543 bits (281), Expect = e-159
 Identities = 313/327 (95%), Gaps = 7/327 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgctt----tccccgtactcaccctttgtctctggtttggcttgctgcgtctt 60
           ||||||||||||    ||   |||||||||||||||||||||||||||||||| | ||||
Sbjct: 204 gaattcttgcttaaggtc---gtactcaccctttgtctctggtttggcttgctacttctt 260

                                                                       
Query: 61  aaaccaagagagcagggtcaaggatggctatgggatctgatgtagcattaggtcagtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccaagagagcagggtcaaggatggctatgggatctgatgtagcattaggtcagtcac 320

                                                                       
Query: 121 aaatcagtgaagcaagagggatgcacggtgacctatttaaagacacttatttatattcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcagtgaagcaagagggatgcacggtgacctatttaaagacacttatttatattcag 380

                                                                       
Query: 181 gacactggtgtgctggtttgagagtgtggctggcaggcaagcctggacatcctcgcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacactggtgtgctggtttgagagtgtggctggcaggcaagcctggacatcctcgcaggc 440

                                                                       
Query: 241 tttacagttcatttttgttcctctgggttctttgtgtcagcgtggagtatctggcagtgg 300
           ||||||||||||||||||||| ||||||||  |||||||| ||||||||||||| |||||
Sbjct: 441 tttacagttcatttttgttcccctgggttcagtgtgtcagtgtggagtatctgggagtgg 500

                                      
Query: 301 tgctctggagaccgaggagcactgcag 327
           |||||||||||||||||||||||||||
Sbjct: 501 tgctctggagaccgaggagcactgcag 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)