BAC Information

Click to search

BAC

Clone NameMSMg01-443P13
Chromosome1 (Build37)
Map Location 165,257,407 - 165,257,649
singlet/doubletsinglet
Overlap genenone
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597
Downstream geneScyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443P13.T7 (MSMg01no443_p13.b1)MSMg01-443P13.TJ (MSMg01no443_p13.g1)
ACCAG533249AG533250
length716780
length of high quality
(start - end)
243 (76 - 318)171 (77 - 247)
definitionCHROMAT_FILE: MSMg01no443_p13.b1 PHD_FILE: MSMg01no443_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:44 2005CHROMAT_FILE: MSMg01no443_p13.g1 PHD_FILE: MSMg01no443_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCTCTATAATTGCGGCGCTAAACGACNCACATTTTCAGAAAAGCCGCG
GAANNCCTGGGATCACAAGACAGCCAGTCTAGCCTACTTGGTGAGCACTG
AGCTAATTATAGGCCCTGTCGCAAAGGAGTAATGACATTCCTAAGGGAGG
CAGCCAAGGCTGTCCTCTGGGCTCTACATACACATGCACCTGCATACACA
CAGCACACACATACACATGAAGAAACATAGAACATCAGCATATGAAATAT
ATATCTATACATTCAATTTTAAGTTCAAGATGTGGTAAATAGGTCATAAT
ATAGCAAATCTTAAAATTCACTGCNTTTAAAAACTTGAAATACATGTAAC
TGTAAGTTATTCAGAAACAGACTCTGCACAAAGGCATAAAGTAGAAACTG
AAAAAAAAAGTAGCTGATAATTCAACAATTGATTAAACAGGGAACAGACC
TTTGAATTATTTTTATGATAACATTCTTAGTGGGCAAGCCCTGGGGAAAA
GAAAATATGTTTCCATTTTTTTAAAACTCCTATAAATCACTAAGAATTAC
GACATATTACTTCAATATCAGATTTCCAATGCTACAGCAACTTTCTAAAA
CATACATGATGGTGGTGAGGCTATCCTGTCAGCCTACTTGATGGAAGTAT
AATTAATATAGCGGAGAAGGGGAGGATCATCCTCCTAGCCTTTACCACTC
TCCTTTTAGGCATCCC
TTTCTATGACTGNTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTACAGGNAATCTCTGTTTACGTCTGTACCTCATTTT
CAAATGCATTATTTGATTTGTTGTTGTCTAATTTTTTTTGAGTAGTTTAT
ATATTTTGAATATTTGTCCTCTGTCACATGTAGGGCTGGTGAAGATCTTT
TCCCATTCTTTTTTTTTAATTAGGTATTTTCCTCATTTACATTTCCAATG
CTATCCCAAAAGTTCCCCATATCTTCCCCCCACTCCCCTACCCACCCATT
CCCACTTTCTGGCCCCGTTTTTTTTTTTGTGCTGGGGCATATCAAGCTTG
TATGACTTATGGTTCCTCTCTTTTCAGTGATGTCTTACTAGCGCCCTCTT
TGTATAACCCTGTTCCTACACCCCAGATCTCTCGTTTACTGTTTAACTCT
CACCTGTGGTTCCTTTTATTTGCGCCGCTTTTTTCCCCCACCCCCTTCTT
TTTCCTTTTCCCTATATTCTTTTTTTTCCTTCTTCTGTTCTTCCTCTTTT
TCATATCCTCTACCTTTTTTTTTTCTCCTTCCCCCTTTTCCCTTTTACCC
CTCCTTCCCCCTCCCCCTATTTATATTATACCTCCCTCCTCGTTTATTAT
CCTTTTAATATTCTCCTTTCCTCCTTATACGCTCTTCTTTTGTCACTCAC
CCCCTCCATTCCACCCCCACTCTTTGCTTTTCGCGTTTTTTTTCATCCAC
TTACCCTTCCCACTCTTTCTCTCTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_p13.b1 MSMg01no443_p13.b1 CHROMAT_FILE:
MSMg01no443_p13.b1 PHD_FILE: MSMg01no443_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:44 2005
         (243 letters)



>mm_chr1_165257080_165257722
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctagcctacttggtgagcactgagctaattataggccctgtcgcaaaggagt-aatg 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 570 agtctagcctacttggtgagcactgagctaattataggccctgtcgcaaaggagtaaatg 511

                                                                       
Query: 60  acattcctaagggaggcagccaaggctgtcctctgggctctacatacacatgcacctgca 119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gcattcctaagggaggcagccaaggctgtcctctgggctctacatacacatgcacctgca 451

                                                                       
Query: 120 tacacacagcacacacatacacatgaagaaacatagaacatcagcatatgaaatatatat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 450 tacacacagcacacacatacacatgaagaaacatagaacatcagcatatgaaatataaat 391

                                                                       
Query: 180 ctatacattcaattttaagttcaagatgtggtaaataggtcataatatagcaaatcttaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 390 ctatacattcaattttaagttcaagatgtggtaaataggtcataatatagtaaatcttaa 331

              
Query: 240 aat 242
           |||
Sbjct: 330 aat 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)