BAC Information

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BAC

Clone NameMSMg01-444A09
Chromosome1 (Build37)
Map Location 179,189,807 - 179,190,078
singlet/doubletsinglet
Overlap genenone
Upstream genePld5, Cep170, Sdccag8, LOC666235, Akt3
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444A09.T7 (MSMg01no444_a09.b1)MSMg01-444A09.TJ (MSMg01no444_a09.g1)
ACCAG533289AG533290
length1,303733
length of high quality
(start - end)
---272 (376 - 647)
definitionCHROMAT_FILE: MSMg01no444_a09.b1 PHD_FILE: MSMg01no444_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:48 2005CHROMAT_FILE: MSMg01no444_a09.g1 PHD_FILE: MSMg01no444_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACAATACTTTCGTGCCCCCGCATCACTACAACGCCTACTTAATGTGTAC
TCAAGGAACCCGGCGGCNCATGTCATCTNTTCTAATTCTTCTACGCAGAG
ACTAAGGAGTTATCATGGGATGTCATCTCTTGCTACTATGCCTACTTCTC
CTCCTCTTATATTCTACCATCCTTCTCCTTACCGCCTCGCTTTTTCGCAC
TCAAGNTACGCCGCCACAATCCATCTCTTTACCATCTTGCCATCGTTCGT
ATTCATCTTTTTCTTACACCATCCCATCTGTTATTCCTCTCTACCCTATT
CCCCATTCAACATCTATCGCCCTATCCGTCTCCTCTATNCGTTCTCTACC
CATCACACACCCATTTCCTATCATCCTTTCCATCCTCTAATTCACTCCGC
CTTTTATCTCATTTTCTTTCTACTTACCCTACCAACATCTCTCCTTCCTA
CTTCTTCTAATATTCATTTNCACCATCTCTACCATACCTATTCTCTTACA
CGATACATCCTGTCTTACACACATTAATCCCCGTAACTCATCTTTTACGC
ACCCAACGTTCCATCTTATCTCCCACCCTTGTTTACCTTATTCTATCTCT
CTCACGTTTTCCACCCCTTTCCACCCCCGCACTATCCTATATATTATTCT
TATCCATATTTTCCCCGCACTTCTCCACCTTCTTTTTACATTTATACCCC
CTCTACCACCTCCCCATTGTCCTTTCCGCCCATCCAACATCTCTTTCACA
TTCACTTTCCACCTCCCATTTTTGTATCCCACTTCTCTCTCCTCCTCCCC
TTATTTTTCCACCATTTACTCTTATATTATCTCTCACACTACCACCCCAC
CTCCTATTTGTCTTTTCCCCACCCTCCCATCCCCTTCATCGCCACCATTC
TCTCTTTCCCACCCCCCTCTTTTCTTTCTGTCTTTTTATTTTCTCACCAC
TTTTTCTTTCTCACCACTTCTCCCCCTCTTCTATTATCCCACCCCCTTAT
ACTATTCCCACCTCTTTTTTTCACCCGCTTCTTATTCGCCCCCTTTGTAC
CTCTCTATCTTTTCCTACTCATCTCTTCTACCTATACCTCTTTCTTCTTT
CACTCTTGTTCTCCCCCGCCTGTTTTCCCCTCTCTTTTCTTTCTCATACG
CTTTGTTCGCCCATCAACACACACTCCTCCATATTCCTTCTATTTATTTA
TCTCACTCTCTCCCTCCTCTCTCCCCCTCTTTATCCCATTCTTCAACATC
TTCTCTCCTATATCCCCCACCTCCATCTTTTCCCACCCCTCTCCCCCCCT
TCG
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTACCAACAACAATCTATAGGATTTGGCAAGACAGG
ATTCCTCTATGCAGCCCATTCTGGCCAGTGATTGGTTCCTTGGGCTTATG
AATGGTGGAAAACTATATGCTGTGTTGGGATTACAATAATCACCTCCTCA
GCTCCTGATGTAATCAGGGTGTTTTGGAGTCATTAGGCCCAATGAAGGAT
TTCTCAAATGGTCTTTCCCTGGGCTGTTTATCATCGATACAGCGTACAAC
AATGGTAGCAGGAAGATTTATAGGTTTCTCCACCTGTTAGAAGCCATGGC
AAGTGGTAGCATCAGCCAAGTCGTGGGGACAGGAGGGGATGGTCATGGCA
GTTAGACCATACAGACTGCAGGACTGTCACAAGGCACCAACACCAACAGC
CTAAGGGTTATAATCATAGCTGGTGCTCAGTGCTGCCAATTATTCAGAGA
GCCAACTGTTGCACTTGAAGACTTCTAGGCCACTGGCAACCAAAGCCAGA
GTAGTAAGTGTCTTAATCCAAGTTCTTAAAACTGTTTGATTCTGGTTCTT
AAGATTTGGTAACATAAACTGTAGTTCTCTGGTGAGAGCTCTATAAACCT
CTGATGTTTGTCAGCCCAGCCTTAGCCACTGGACCATTATACCTCTATCA
TTCCCAGTAATTTTCATCTCTATGGATACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_a09.g1 MSMg01no444_a09.g1 CHROMAT_FILE:
MSMg01no444_a09.g1 PHD_FILE: MSMg01no444_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:48 2005
         (272 letters)



>mm_chr1_179189607_179190278
          Length = 672

 Score =  511 bits (264), Expect = e-149
 Identities = 270/272 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggacaggaggggatggtcatggcagttagaccatacagactgcaggactgtcacaaggc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gggacaggtggggatggtcatggcagttagaccatacagactgcaggactgtcacaaggc 413

                                                                       
Query: 61  accaacaccaacagcctaagggttataatcatagctggtgctcagtgctgccaattattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 accaacaccaacagcctaagggttataatcatagctggtgctcagtgctgccaattattc 353

                                                                       
Query: 121 agagagccaactgttgcacttgaagacttctaggccactggcaaccaaagccagagtagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 352 agagagccaactgttgcacttgaagacttctaggccactggcaaccaaagtcagagtagt 293

                                                                       
Query: 181 aagtgtcttaatccaagttcttaaaactgtttgattctggttcttaagatttggtaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aagtgtcttaatccaagttcttaaaactgtttgattctggttcttaagatttggtaacat 233

                                           
Query: 241 aaactgtagttctctggtgagagctctataaa 272
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aaactgtagttctctggtgagagctctataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)