BAC Information

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BAC

Clone NameMSMg01-444J22
Chromosome1 (Build37)
Map Location 31,672,252 - 31,672,494
singlet/doubletsinglet
Overlap geneLOC624275
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444J22.T7 (MSMg01no444_j22.b1)MSMg01-444J22.TJ (MSMg01no444_j22.g1)
ACCAG533743AG533744
length773701
length of high quality
(start - end)
244 (77 - 320)115 (75 - 189)
definitionCHROMAT_FILE: MSMg01no444_j22.b1 PHD_FILE: MSMg01no444_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:34 2005CHROMAT_FILE: MSMg01no444_j22.g1 PHD_FILE: MSMg01no444_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCXXXXXXXXXX
XXXXXXXXXXXXCTTTTCCAGAAAGAATATCGGAAGAGAACCAGCTTGTG
GATACAGGAGGGCACGTGTTCCTGCCCTCCATGATCTGGTCCAGCTCTGG
AACAAGTGTGAGCCTGGAGCTGATGACAGAGATGGCCCATCTGTTCTATG
GACTGATAGAGCGGACCCGAGAATTCCTGAATGAATCTGAAACCCCAATG
GCCAGTGTTGGAGAGTTCCTGAAGAAGGAGATAAGTCAGCAGGTGGCTAG
CTGGACCGAGGATGATGAGGACTTTTTAAAGCGCAAGCTGGCTATCCTGA
ATACTTTCTTCAACATATAGTGTTGTGTGAGCGGCACCCACAGCATGGAC
CTGGTGGCTCTTGCACCGTTCGGGGAGTATACAGTGCTGCCTGGGCTGGA
TTGCATCTTGGCTGGGTATGGGCCATAGCCCTGCCAGCTCTGTCCCTACT
GTCCAGGCAGAGGCACTAGACTGGATAAAGGAGGGAGAAGCTTAGACAGG
AGCTTTTTTTTTTTCCCCTTTTTCTTCCCTTTTCTTTTACTTCTCGCCTT
TTCCCTTTTTTCCTTTTTTTCCCCCCCTCCCCCCCCTTTATTCTTTTCCC
CCCTTTTTTTTTTTTTTTTTTCTTTCCTCCCTTTCTTCCCCTTTTTTCCC
CATTTTTACCCCCTTTTTCTCCTTTTCTCCATGTTATTTCTCTTTTTTGT
CCCCTTACTCTTTTCTTTTGTTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATCCCACATCAAATCANAACCAC
AAAAAGCCAATGGAATTGTCGAGACAGGGTGCCTCCTATCAACCCCATTT
GTTTTAGGGAAGGTGGTCTCTAACAAGAATTACCTAGATGAATCTGGATC
ACTAATTAAAANAAATCTATTTANNTCATAATTTTGAAAATTAGCATCCT
TGACTGCAGAAAAANTAAATGATNCTNGAGGCCAAGAGGAACTTTTGAAN
NCTNGNATAAAAAACTTTTTTGTTNAATTACGACTAATTTATGGGGAAAA
AATTNTCTAAAAAAAAAAAAANNNNGAATTTTTTAAAAACTTTTTTTAAA
NNNATTTTCTGGATGAAAAGAAGTNNNNNNNNCTNNNNNCNNNNNNNNNN
TTTTGTTGGNAAAAAATTTTTTTCAAAGAGAAAGAGTAAAAGTGGNNNNN
AAAGATTAAGGGTGCGAAAAAAAAAACAATAAAANTNCCATTAAAAAAAN
NCCACCAAAAAAAAAAACTCTTTTTCTTTTAAATNTACTGGGGGGACCCC
CTTTAATTAAAAAAAAAAACACCCCTCTCCGAAAACCAAAAAAAAAAAAA
TTTTCTTCCTCCCAATAACTCCTCTTCTATTTATACTTTTCTCTTTTTTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_j22.b1 MSMg01no444_j22.b1 CHROMAT_FILE:
MSMg01no444_j22.b1 PHD_FILE: MSMg01no444_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:34 2005
         (244 letters)



>mm_chr1_31672051_31672694
          Length = 644

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   tatcggaagagaaccagcttgtggatacaggagggcacgtgttcctgccctccatgatct 61
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 202 tatcggaagagaaccagcttgtggatacaggagggcacgtggccctgccctccatgatct 261

                                                                       
Query: 62  ggtccagctctggaacaagtgtgagcctggagctgatgacagagatggcccatctgttct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 ggtccagctctggaacaagtgtgagcctggagctgatgacagagatggcccgtctgttct 321

                                                                       
Query: 122 atggactgatagagcggacccgagaattcctgaatgaatctgaaaccccaatggccagtg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atggactgatagagcggacccgagaattcctgaatgaatctgaaaccccaatggccagtg 381

                                                                       
Query: 182 ttggagagttcctgaagaaggagataagtcagcaggtggctagctggaccgaggatgatg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttggagagttcctgaagaaggagataagtcagcaggtggctagctggaccgaggatgatg 441

              
Query: 242 agg 244
           |||
Sbjct: 442 agg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)