NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCC
GCGGAATTCATCCAAATTTAACTGTGAATACCTCTTCCTATTGTTCCTTG
TGTGACAGACAAATTGAAGGTAGAAGGCAATCTACCCAGAGTTGATTCAG
GAAGGAAAGTAAGTGAATCTGCAAGTCAGCCATTGCTCCAAAACATAGCA
GGCGACCAAATTATCCCTAAAGTGGGTTGTTACACACAGTAAACTGCATA
CTCACAGTTTGTGTTTCTACAGGTTGGCTGGAGTTTAATCAGCTCAGGCT
GGGCTCAGTGCACTCACTATATGCTTGTTTCCCAGCTACTAATGAGGAAT
GCAGATGCTCCCCATGTCCCTATCACTCACATCCTCACATTCCTCAGACC
ACTGGATACCTGAGTCTTGTTAATCACATGATTCAAGACAGATAGCAAAA
GTCAACATGCTTTTCAAGTATTTGGTCACATAACATCTGCTCACATCAAA
CGGCCAAATACATTGACATGGCTAAGTTCACAGACAACTGTAGGGAAACA
GCCTCTCTAATGATACTGAGATCTCAACAAGGGTGTAGCAGTGTAATGTT
ACTATATGGATGTGAATACTTGAATTCCCTCACCAACTGGACGCCAAGTT
TTGATGCCTATCTCTTTACCAGGGCCATGAATAAACACACGGGGTTTATT
TTTCTCTTCCGGGATCAGTCCCTCCTGCCAGAG

ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAAAAGCTACATA
GTGAGATGTTGTTTCAAAAAATAAAATAAAATTACTGCTAAATTTATTAT
ATATAGCCGAACCAAATAACCTTACTTTGTCTTGATTTTCTGAAAAGCTT
CTGTAGTGTCTCTTTAAAAGCAAACCAAATGGAAATTAATGACCTATGGT
CTTTATAATTTTCCTGCATATTTTGGAATCAAAGCTAACAAAGCAGTCTG
CATAGATGGTGAAGGGCTGGTTTTTTTCTGCTCCTCTTCTAGAGCCAGGC
TTGTGGCTTCAGCAACCTTGCAGCCCCATCGCTCATTTGCATAATGGATG
CCTTTTTATCCATTATGCAAATGGTATGAGAGGAAAATTAGGCAATAAGG
GAAGACGAAAGGAGAAAATTGCTCTTGCTTGTTTTAATATTCTATTTATA
AGCAAGTGCTGTGGGCTTCGAAAGACAGACTCGGGGTATCCCTGCCTTGG
GAAACTTGTTTCCACCTTTCTCTTCTGGGCTTTTTCAGGAAAGAAAGCTT
GTTTTCGGTTTTCATTTCACAGCTTCTTTTGTTGGACCATCTCGATAAGA
TAGTGTTGTTGTATCCCACAAGAAAAACCACTTCCCTTCTCTTCCTTTCA
AAAGAAATTTTTTTTCTTTTCCTAAAGAAACATTTGGATTTTTTTCCCTC
CTTCCCT

Query= MSMg01no444_k21.b1 MSMg01no444_k21.b1 CHROMAT_FILE:
MSMg01no444_k21.b1 PHD_FILE: MSMg01no444_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:39 2005
         (525 letters)



>mm_chr1_62231579_62232503
          Length = 925

 Score =  949 bits (491), Expect = 0.0
 Identities = 515/523 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcatccaaatttaactgtgaatacctcttcctattgttccttgtgtgacagacaaa 62
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattcatccaaattaaaatgtgaatacctcttcctattgttccttgtgtgacagacaaa 666

                                                                       
Query: 63  ttgaaggtagaaggcaatctacccagagttgattcaggaaggaaagtaagtgaatctgca 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttgaaggtagaagggaatctacccagagttgattcaggaaggaaagtaagtgaatctgca 606

                                                                       
Query: 123 agtcagccattgctccaaaacatagcaggcgaccaaattatccctaaagtgggttgttac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agtcagccattgctccaaaacatagcaggcgaccaaattatccctaaagtgggttgttac 546

                                                                       
Query: 183 acacagtaaactgcatactcacagtttgtgtttctacaggttggctggagtttaatcagc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acacagtaaactgcatactcacagtttgtgtttctacaggttggctggagtttaatcagc 486

                                                                       
Query: 243 tcaggctgggctcagtgcactcactatatgcttgtttcccagctactaatgaggaatgca 302
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 485 tcaggctgggctcagtgcactcactatatgcttgcctcccagctactaatgaggaatgca 426

                                                                       
Query: 303 gatgctccccatgtccctatcactcacatcctcacattcctcagaccactggatacctga 362
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 425 gatgctccccatgtcccaatcactcacgtcctcacattcctcagaccactggatacctga 366

                                                                       
Query: 363 gtcttgttaatcacatgattcaagacagatagcaaaagtcaacatgcttttcaagtattt 422
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtcttgtttatcacatgattcaagacagatagcaaaagtcaacatgcttttcaagtattt 306

                                                                       
Query: 423 ggtcacataacatctgctcacatcaaacggccaaatacattgacatggctaagttcacag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggtcacataacatctgctcacatcaaacggccaaatacattgacatggctaagttcacag 246

                                                      
Query: 483 acaactgtagggaaacagcctctctaatgatactgagatctca 525
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acaactgtagggaaacagcctctctaatgatactgagatctca 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no444_k21.g1 MSMg01no444_k21.g1 CHROMAT_FILE:
MSMg01no444_k21.g1 PHD_FILE: MSMg01no444_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:39 2005
         (513 letters)



>mm_chr1_62057988_62058900
          Length = 913

 Score =  946 bits (489), Expect = 0.0
 Identities = 504/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaaaaagctacatagtgagatgttgtttcaaaaaataaaataaaattactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaaaaagctacatagtgagatgttgtttcaaaaaataaaataaaattactg 260

                                                                       
Query: 61  ctaaatttattatatatagccgaaccaaataaccttactttgtcttgattttctgaaaag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatttattatatatagccgaaccaaataaccttactttgtcttgattttctgaaaag 320

                                                                       
Query: 121 cttctgtagtgtctctttaaaagcaaaccaaatggaaattaatgacctatggtctttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctgtagtgtctctttaaaagcaaaccaaatggaaattaatgacctatggtctttata 380

                                                                       
Query: 181 attttcctgcatattttggaatcaaagctaacaaagcagtctgcatagatggtgaagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttcctgcatattttggaatcaaagctaacaaagcagtctgcatagatggtgaagggc 440

                                                                       
Query: 241 tggtttttttctgctcctcttctagagccaggcttgtggcttcagcaaccttgcagcccc 300
           |||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttggtggctgctcctcttctagagccaggcttgtggcttcagcaaccttgcagcccc 500

                                                                       
Query: 301 atcgctcatttgcataatggatgcctttttatccattatgcaaatggtatgagaggaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcgctcatttgcataatggatgcctttttatccattatgcaaatggtatgagaggaaaa 560

                                                                       
Query: 361 ttaggcaataagggaagacgaaaggagaaaattgctcttgcttgttttaatattctattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaggcaataagggaagacgaaaggagaaaattgctcttgcttgttttaatattctattt 620

                                                                       
Query: 421 ataagcaagtgctgtgggcttcgaaagacagactcggggtatccctgccttgggaaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagcaagtgctgtgggcttcgaaagacagactcggggtatccctgccttgggaaactt 680

                                        
Query: 481 gtttccacctttctcttctgggctttttc 509
           |||||||||||||||||||||||||||||
Sbjct: 681 gtttccacctttctcttctgggctttttc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)