Query= MSMg01no444_o12.b1 MSMg01no444_o12.b1 CHROMAT_FILE:
MSMg01no444_o12.b1 PHD_FILE: MSMg01no444_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:57 2005
(408 letters)
>mm_chr1_151196436_151197244
Length = 809
Score = 737 bits (381), Expect = 0.0
Identities = 399/407 (98%), Gaps = 5/407 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtcttctt---tatcaccaccttttataaattaagtcatcaaaaacggtacca 61
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctgtcttcttaagta--accaccttttataaattaagtcatcaaaaaaggtacca 262
Query: 62 tttgcatgattttggttattattatttaatttcttaaccgattatctgcaaatgaagatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttgcatgattttggttattattatttaatttcttaaccgattatctgcaaatgaagatt 322
Query: 122 cttttcagtccttgatcgttgactgcaaaaattgtatcttttcattccaatacttttaac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttttcagtccttgatcgttgactgcaaaaattgtatcttttcattccaatacttttaac 382
Query: 182 taggatgctgagctcttgtctgttctttcacttttggggatggagtagggtggatagcat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taggatgctgagctcttgtctgttctttcacttttggggatggagtagggtggatagcat 442
Query: 242 ttgaaaaagagtttcattttgtagcttgggctaccctattactcactatacagatcagaa 301
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 ttgaaaaagagtttcattttgtagcttgggctaccctaaaactcactatacagatcagaa 502
Query: 302 tggccttgaaattgcagacatctacctgcctctgcatctagtgttggcattaaaggcaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggccttgaaattgcagacatctacctgcctctgcatctagtgttggcattaaaggcaaa 562
Query: 362 tacgatcctaactggctctaccaagagtaagaatttttctttcttct 408
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacgatcctaactggctctaccaagagtaagaatttttctttcttct 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space: 319200
Effective search space used: 319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_o12.g1 MSMg01no444_o12.g1 CHROMAT_FILE:
MSMg01no444_o12.g1 PHD_FILE: MSMg01no444_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:57 2005
(571 letters)
>mm_chr1_151397571_151398542
Length = 972
Score = 1000 bits (517), Expect = 0.0
Identities = 558/574 (97%), Gaps = 5/574 (0%)
Strand = Plus / Minus
Query: 1 cctgatgnctaaattttatttcggttttttgctatattgcatatattaatctataaaact 60
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 772 cctgatgtctaaattttatttcagttttttgctatattgcatatattaatctataaaact 713
Query: 61 ttggtcaaatcacatatttactataattagtttctaataaataagagtgaataattgtat 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 712 ttggtcaaatcacatatttactataattagtttctaataaataggagtgaataattgtat 653
Query: 121 gaatcacaaaaggttatataataacattagaaagaaaaacaatgcttgtaatgcttatct 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaatcacaaaaagttatataataacattagaaagaaaaacaatgcttgtaatgcttatct 593
Query: 181 atctgccatgtggactatttaatatttgagactattaactgagaaaataaaccagttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atctgccatgtggactatttaatatttgagactattaactgagaaaataaaccagttcat 533
Query: 241 aagt---ccttaagtggcaaagagtatgacaatagaaatagagaaagaaggcaagcataa 297
| | || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 532 a--tgcccccaaagtggcaaagagtatgacaatacaaatagagaaagaaggcaagcataa 475
Query: 298 accttacagtcgtggacacagtgttggggaaaatagctatatgtagtagctgctaattac 357
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 474 accttacagtcgtggacacagtgttggagaaaatagctatatgtagtagctgctaattac 415
Query: 358 tctatttaaaagcctaactttttagaaagaagtttataaactgcactgaaggtcacagag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tctatttaaaagcctaactttttagaaagaagtttataaactgcactgaaggtcacagag 355
Query: 418 cattatgagacacatacagggtaaataaatctaaatgacaggatgagagaaatctgctct 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cattatgagacacatacagggtaaataaatctaaatgacaggatgagagaaatctgctcc 295
Query: 478 gagttagataaaaacaaattaacagccatatttggcccaagctttctaccaaatcatgaa 537
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 294 gagttggataaaaacaaattaacagccatatttggcccaagctttctaccaaatcacgaa 235
Query: 538 atgatgatacaaaaattcagtctataacttctat 571
||||||||||||||||||||||||||||||||||
Sbjct: 234 atgatgatacaaaaattcagtctataacttctat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
