BAC Information

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BAC

Clone NameMSMg01-445B13
Chromosome1 (Build37)
Map Location 175,129,715 - 175,130,190
singlet/doubletsinglet
Overlap genenone
Upstream genePea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406
Downstream geneOlfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445B13.T7 (MSMg01no445_b13.b1)MSMg01-445B13.TJ (MSMg01no445_b13.g1)
ACCAG534107AG534108
length740751
length of high quality
(start - end)
494 (60 - 553)504 (66 - 569)
definitionCHROMAT_FILE: MSMg01no445_b13.b1 PHD_FILE: MSMg01no445_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:11 2005CHROMAT_FILE: MSMg01no445_b13.g1 PHD_FILE: MSMg01no445_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTAAACGACTCAAANATGCCAGAGGATCCGCGGAATCTTTCAAT
TTCACCATACTTTTCTCTGAGATGGCGGGACCTCTCTGGTTATCCCCTGA
TCCTGGCAGATCAAGTATCTGCAGTTATGTGTATCCTCTCTCACTGAGGC
CAGAATAGTCAGCCCTGTTGGAGAACAGATTCCACAGACAGGCAGCAGCT
TTAAGGTCTGCCCCCATTCCAGTTATTGGGGGATCCACACAAAGACTGAG
CTGCCTATCTATTCCTTATGTGTCAGGGGCTTTGGTCCAGCCCGTATATG
TTCTTTGTTTGGTGGCTCAGTCTTTGAGAACTCTCAAGGGTCCAGGTCAG
ATGACTTTGTTGGTCTTCCTGTGGAGTTCCTTTCCCCTTCAGGGCCTTCA
GTCCTTCGCCCAACTCTTCTGTAAGAGTCCTGAACCTCTGTCCGGTCTTT
GGTTATGAGTTTCAGTCAGCTCCTGGGTAGAGCCTCTCAGAGGGACAGCC
ATGCTAGACTGTCTGCAAGCATAACAGAGTCTCATTATTAATAGTGTTAG
GGGATTGTTCTTGCCCATGGGATAGGTCTCAAGACGGGCTGTCTATTGGC
TGGCCATTCCCTCAGTCTTTGCTCCTATCTTTGTCCTTTCCTTTGATTAA
ACCGGACACTTTTTGGAACCACAATTTTTTGCGATTGGGCCGGTGTCCTT
ATCCCCTAATTGTCATCCCCGCCTTGTCTTCCGGAGGGTN
TGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATTGGTGGATATTCCTTTTTTACTTTGTAAAAAT
GAGCCAGAATACATTATGGTAAGGATAGACTGGGGGAATTCAGTTAAAAG
TTGAAAGATTTATAAACAATCATTTAAATTTGTAAATTTGACTTAAGATT
TTTATCATTTCTCTTCTATTGGCCCATAGGATTTTTTGGCAGTTAAAAAA
TTAAATTTTTCTCTGCCTAGGAGAGAGCTCATTTATAAATAAACTAACCA
TGAAAATATTGCTAGCTAAATTAGATGTCTGACCACATGTAATGGTAAAA
AGAGAAAGTTACACCATAAAATTATCATCTGACCTGGACACATATGCTAT
GGCACATGTACCTGCACACATACTCACATACATCTTGCGTACACAAACAC
ACAATAATGATAATAAAACCCTCTCTGAAGGTTCAACAATCAGATGTATA
CAGACATGCTATCCTCACTAAGGTGTAGAGTGTGTGAAAAAAAATTAGTT
TGGTTTTAATCTGCTTTCATGATGGTGCCAATCATTTTACTTCTCCTTTG
GGGCAGAACAACCTGTCTAGTTAAAATATGTGGGGACATTCTTCAGTGAA
ACTCAAAACCTTTGCTAGGGTAATAAGTTTACAGCCCATTAGTGAAAAAA
TTAGCCCCATCCTGTAAAAAAGGAAATATAAAATTTCCCCCACAAATTCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_b13.g1 MSMg01no445_b13.g1 CHROMAT_FILE:
MSMg01no445_b13.g1 PHD_FILE: MSMg01no445_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:12 2005
         (504 letters)



>mm_chr1_175129715_175130618
          Length = 904

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattggtggatattccttttttactttgtaaaaatgagccagaatacattatggtaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tattggtggatattccttttttactttgtaaaaatgagccagaatacattatggtaagga 417

                                                                       
Query: 61  tagactgggggaattcagttaaaagttgaaagatttataaacaatcatttaaatttgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tagactgggggaattcagttaaaagttgaaagatttataaacaatcatttaaatttgtaa 357

                                                                       
Query: 121 atttgacttaagatttttatcatttctcttctattggcccataggattttttggcagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atttgacttaagatttttatcatttctcttctattggcccataggattttttggcagtta 297

                                                                       
Query: 181 aaaaattaaatttttctctgcctaggagagagctcatttataaataaactaaccatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaaaattaaatttttctctgcctaggagagagctcatttataaataaactaaccatgaaa 237

                                                                       
Query: 241 atattgctagctaaattagatgtctgaccacatgtaatggtaaaaagagaaagttacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atattgctagctaaattagatgtctgaccacatgtaatggtaaaaagagaaagttacacc 177

                                                                       
Query: 301 ataaaattatcatctgacctggacacatatgctatggcacatgtacctgcacacatactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ataaaattatcatctgacctggacacatatgctatggcacatgtacctgcacacatactc 117

                                                                       
Query: 361 acatacatcttgcgtacacaaacacacaataatgataataaaaccctctctgaaggttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 acatacatcttgcgtacacaaacacacaataatgataataaaaccctctctgaaggttca 57

                                                                   
Query: 421 acaatcagatgtatacagacatgctatcctcactaaggtgtagagtgtgtgaaaaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  acaatcagatgtatacagacatgctatcctcactaaggtgtagagtgtgtgaaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)