XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
AGGTTGCCTGCTCATGGACTGGATCTTGGGGAACCACTGACTAAAGGCAT
ACACTTGGAAACCCAACTATCTGAAAAAGGTCTCTTAAAGAATGCAGAAA
TAAAGTAAAAGAAGACCACAACATCACACTGTATCTAAAACAAGCATTTA
CGTCTTTAACCCTGTTCCCAGTATTTACATTGCAATCAAACTATTTGAAA
AGAAACTGTATAAAGCAAGAAGCTCTCTGAAAGAACACAAGAAGACTCAT
TTTAGCAAGAGTCACAGTTTAGTAGAGGAAAGTACACTCATCTCTACAAT
GCACAGACAACAGAAGGGAGATCAGTCAAGACAGTGATCCGAGGGTAAAG
GAGCCGCGGAAGGGATAAGGGAAGAAAATCATGGGGCTGGGTTTTCCAAA
GGTCCACAGGCACTGTCACGCTGGAGAATCCGAGGACGGTAAGAAAGGAG
AGTGTGGTCTAAGGGACATCCACACTAAGATGAGAGTTACACTTCTGGCT
CCTCTCAGGTGGCACAGCCTGTCTCCAGCCATGTCTCTCAGACAGGCTCT
CAGAGACATCACCACTTGTACTTAACTGGTCTTCAGACATCATCTATCCC
TCCTGAACTCAAATGCCCCCCACATGGTTCCACCAGGACTCACTCACACT
CCAATCATAAACCTCGAATGCCCCCACCCAGGGTCACACCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAGCAATAGTTTGAATTTATATAGTAG
GACGGCTTTTACTACCATGTGTAATTTTCTTTCTGATTTTTAAAAGATTT
TGTCTCTTTTCTACTTATTTTTCTATTTTCCTTTTGTTTTGTGTAATAGT
CTTCTTTGAACCACTGTTTTGTTTTGTTTTTTGTATCTTATACACCTACT
TTAGTGTTTTGTTTTGTGGTTACTATGGGGTTTAAAAATAATACCTTGAA
TTTAAAATAGGAAGTTTAAGGGTAAGAACAAATTTCATTACAAACAAAAG
AAAACAAAAAACAAAAAATTATATTCACATCTTCTCCCATGCCTTATTGT
GTGTATATAAATCTACCATTTTTGTTATTTTTAGATCATAATAATTCCTT
GTAGCTACAGTTATTTTAAATGTTTGGTATTTAAAACTAATAATAGAAAG
AAACTTGTTTAGTACACCTTAGGGTGGACATCCTGAAAACGACCACATTC
TTTCTCGGGGCATTACATTTATCCAGCACAGTGATGATACCATGTCAATA
GGAACCAATTTCGTGGTAATCAAAAAATTATTAGGGGAAATCTTAAAACA
CCTTGGGTAAGGGCTTAGTGAAATTTCTTAACCCCCTCGGATAAATTATT
AAAATTTTCCTAAATGTTATGAAAACTGAAATTATCCCCCTTGG

Query= MSMg01no445_j06.b1 MSMg01no445_j06.b1 CHROMAT_FILE:
MSMg01no445_j06.b1 PHD_FILE: MSMg01no445_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:49 2005
         (489 letters)



>mm_chr1_190811615_190812503
          Length = 889

 Score =  917 bits (474), Expect = 0.0
 Identities = 483/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaggttgcctgctcatggactggatcttggggaaccactgactaaaggcata 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaggcagcctgctcatggactggatcttggggaaccactgactaaaggcata 263

                                                                       
Query: 64  cacttggaaacccaactatctgaaaaaggtctcttaaagaatgcagaaataaagtaaaag 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 cacttggaaacccaactatctgaaaaaggtctcttaaagaacgcagaaataaagtaaaag 323

                                                                       
Query: 124 aagaccacaacatcacactgtatctaaaacaagcatttacgtctttaaccctgttcccag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagaccacaacatcacactgtatctaaaacaagcatttacgtctttaaccctgttcccag 383

                                                                       
Query: 184 tatttacattgcaatcaaactatttgaaaagaaactgtataaagcaagaagctctctgaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttacattgcaatcaaactatttgaaaagaaactgtataaagcaagaagctctctgaa 443

                                                                       
Query: 244 agaacacaagaagactcattttagcaagagtcacagtttagtagaggaaagtacactcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaacacaagaagactcattttagcaagagtcacagtttagtagaggaaagtacactcat 503

                                                                       
Query: 304 ctctacaatgcacagacaacagaagggagatcagtcaagacagtgatccgagggtaaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctacaatgcacagacaacagaagggagatcagtcaagacagtgatccgagggtaaagg 563

                                                                       
Query: 364 agccgcggaagggataagggaagaaaatcatggggctgggttttccaaaggtccacaggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agccgcggaagggataagggaagaaaatcatggggctgggttttccaaaggtccacaggc 623

                                                                       
Query: 424 actgtcacgctggagaatccgaggacggtaagaaaggagagtgtggtctaagggacatcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgtcacgctggagaatccgaggacggtaagaaaggagagtgtggtctaagggacatcc 683

                 
Query: 484 acacta 489
           ||||||
Sbjct: 684 acacta 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no445_j06.g1 MSMg01no445_j06.g1 CHROMAT_FILE:
MSMg01no445_j06.g1 PHD_FILE: MSMg01no445_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:50 2005
         (439 letters)



>mm_chr1_190945473_190946311
          Length = 839

 Score =  826 bits (427), Expect = 0.0
 Identities = 436/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagcaatagtttgaatttatatagtaggacggcttttactaccatgtgtaattttctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 639 tttagcaatagtttgaatttatatagtaggacggcttttactaccatgcgtaattttctt 580

                                                                       
Query: 61  tctgatttttaaaagattttgtctcttttctacttatttttctattttccttttgttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tctgatttttaaaagattttgtctcttttctacttatttttctattttccttttgttttg 520

                                                                       
Query: 121 tgtaatagtcttctttgaaccactgttttgttttgttttttgtatcttatacacctactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtaatagtcttctttgaaccactgttttgttttgttttttgtatcttatacacctactt 460

                                                                       
Query: 181 tagtgttttgttttgtggttactatggggtttaaaaataataccttgaatttaaaatagg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 459 tagtgttttgttttgtggttactatggggtttataaataataccttgaatttaaaatagg 400

                                                                       
Query: 241 aagtttaagggtaagaacaaatttcattacaaacaaaagaaaacaaaaaacaaaaaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aagtttaagggtaagaacaaatttcattacaaacaaaagaaaacaaaaaacaaaaaatta 340

                                                                       
Query: 301 tattcacatcttctcccatgccttattgtgtgtatataaatctaccatttttgttatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tattcacatcttctcccatgccttattgtgtgtatataaatctaccatttttgttatttt 280

                                                                       
Query: 361 tagatcataataattccttgtagctacagttattttaaatgtttggtatttaaaactaat 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 279 tagatcataataattccttgtagctatagttattttaaatgtttggtatttaaaactaat 220

                              
Query: 421 aatagaaagaaacttgttt 439
           |||||||||||||||||||
Sbjct: 219 aatagaaagaaacttgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)