Query= MSMg01no445_k05.b1 MSMg01no445_k05.b1 CHROMAT_FILE:
MSMg01no445_k05.b1 PHD_FILE: MSMg01no445_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:54 2005
(304 letters)
>mm_chr1_140437684_140438387
Length = 704
Score = 557 bits (288), Expect = e-163
Identities = 300/304 (98%)
Strand = Plus / Plus
Query: 1 gttgtaaggagcagattactttttaaaaaatgaagaacagtggttttccttgttcagtag 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgtaaggagcagattacttttttaaaaatgaagaacagtggttttccttgttcagtag 260
Query: 61 gagagtaatccaccatagaactgaataacatggctgagatgcaaatacacttctcctcac 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagtaacccaccatagaactgaataacatggctgagatgcaaatacacttctcctcac 320
Query: 121 aaagccttgaagctctgttctctaatcagataagctgggcacagcttacagcatcatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagccttgaagctctgttctctaatcagataagctgggcacagcttacagcatcatttg 380
Query: 181 cctcttcagtacaaagttatgtttaaactgggagtcaacacagaatcaacaattaaagaa 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 cctcttcagtacaaagttatgtttaaactgggagtcaacacggaatcaacaattaaagaa 440
Query: 241 gaaagacaaagcaaactgataaactcccacaccacttgaggcatacaacgcaaaccgagg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagacaaagcaaactgatagactcccacaccacttgaggcatacaacgcaaaccgagg 500
Query: 301 gcag 304
||||
Sbjct: 501 gcag 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_k05.g1 MSMg01no445_k05.g1 CHROMAT_FILE:
MSMg01no445_k05.g1 PHD_FILE: MSMg01no445_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:54 2005
(386 letters)
>mm_chr1_140511510_140512297
Length = 788
Score = 690 bits (357), Expect = 0.0
Identities = 382/393 (97%), Gaps = 7/393 (1%)
Strand = Plus / Minus
Query: 1 tgacatgcttcattcattagtgttcatcttagcccactgttggtaagactcttggtatga 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 721 tgacatgcttcattcattagtgttcatcttagctcactgttggtaagactcttggtatga 662
Query: 61 ctgttatcattagaggcaatttggggtatgtgtgatttagtaagctg----ttttttttt 116
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 661 ctgttatcattagaggcaatttggggtatgtgtgatttagtaagctgctttttttttttt 602
Query: 117 ttttttttt-aatgaacttttt--aaagaaaaacaaagaaaggagaatccaagtgcaggt 173
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttttttttaaatgaacttttttaaaagaaaaacaaagaaaggagaatccaagtgcaggt 542
Query: 174 ctgtaatcctagacagggcgagctgaggagctgaggtagggtattgggaatgccagtgca 233
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 541 ctgtaatcctagacagagcgagctgaggagctgaggtagggtattgggagtgccagtgca 482
Query: 234 gcttgggctgtgtcagatctcaaacagcaagcacatccacaacagagcagcacctccggc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcttgggctgtgtcagatctcaaacagcaagcacatccacaacagagcagcacctccggc 422
Query: 294 ccccaggaacaaaacagggagggaaagaaaagtggacttagtctctctaatgaaaaagga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccccaggaacaaaacagggagggaaagaaaagtggacttagtctctctaatgaaaaagga 362
Query: 354 aaacaataaattactggaaggggcctgttgtca 386
|||||||||||||||||||||| ||||||||||
Sbjct: 361 aaacaataaattactggaagggacctgttgtca 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 788
Length adjustment: 9
Effective length of query: 377
Effective length of database: 779
Effective search space: 293683
Effective search space used: 293683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
