XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGACGAATACCGAAAGGCAGAGAAGCACCTGAAAAAATGCTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACT
GGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCCATTACAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACTTTCTCCAAGGAACTT
CCCCCATATGCACTCCTGGATAAGGGGATATTTTCCCCTTACCCTAGAAT
ACCCTGAAATTATAAACCAATTTTCCTAAACCCCTGTACACTCCAAAAAA
TTGTGAACCTGCAGTTGTGTTCACCTACGCCCCCTTTTAACAATTN

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTCCCCATTTTTAATA
GGGTTATTTAGTATATCTTTATAAATACCTTTAAACACAGTTTAATTCAG
AAGTAAAAAACATCTTGAACACAACTGTAAAAATCTACACAACCTACAAA
TAGAATAACAAGATGTGTAGGTTAAACCTAAAGGCTTGAGGGAAAACTAT
GTTGTGAATTTTATAAAATGTTTCAATTTTGATAGACCAAGAATTTGTTT
CTAAGACCTTTAAATCTCCACAAGAGCCAGAAGAAAAAAAAATTCTCATT
GAGAACCGCATTTATGAATGATTTGTCAATCTTTATTCTACTGAGTACTG
TGGGAGGTCAAGGGTCAAGTCTCACCAAAGTGTTACTTACTTTTTGTTTT
ATTAAAAAAATGTTTCCATCAACCATTTTATATCTTTCTTCCATTGAGAG
ACTTCCTGATTTGCCCTGCATTTATAAAAAGCAGAATTAAATACTGGGGC
GCTATCACTTGGTGTTTGTAGTTGAGAAAGCTGTGAGGAACGTGTGGTCT
GGAACCTAACTTCTTGAAAAATCGGGCTCAGAATCTTGATAGGCAAAATC
TCTCAAGGGCCCCCCCCCAGAGAAAAAGCTACCACCCGATTATTAACTGC
GTAAAAAAAAAAGCCACTCCTTTTCCCGGGAAGAAATTN

Query= MSMg01no445_n07.g1 MSMg01no445_n07.g1 CHROMAT_FILE:
MSMg01no445_n07.g1 PHD_FILE: MSMg01no445_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:11 2005
         (483 letters)



>mm_chr1_179483735_179484614
          Length = 880

 Score =  872 bits (451), Expect = 0.0
 Identities = 475/483 (98%), Gaps = 3/483 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttagctctgttccccatttttaatagggttatttagtatatctttataaatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtttagctctgttccccatttttaatagggttatttagtatatctttataaatacct 260

                                                                       
Query: 61  ttaaacacagtttaattcagaagtaaaaaacatcttgaacacaactgtaaaaatctacac 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ttaaacacagtttaattcagaagtaaaaaacatcttgaacaca-ctgtaaaaatctacac 319

                                                                       
Query: 121 aacctacaaatagaataacaagatgtgtaggttaaacctaaaggcttgagggaaaactat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 aacctacaaatagaataacaagatgtgtaggttaaacctaaaggcttgagggaacactat 379

                                                                       
Query: 181 gttgtgaattttataaaatgtttcaattttgatagaccaagaatttgtttctaagacctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttgtgaattttataaaatgtttcaattttgatagaccaagaatttgtttctaagacctt 439

                                                                       
Query: 241 taaatctccacaagagccagaagaaaaaaaaattctcattgagaaccgcatttatgaatg 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 taaatctccacaagagccagaagaaaaaaaa-ttctcattgagaaccgcatttatgaatg 498

                                                                       
Query: 301 atttgtcaatctttattctactgagtactgtgggaggtcaagggtcaagtctcaccaaag 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attcgtcaatctttattctactgagtactgtgggaggtcaagggtcaagtctcaccaaag 558

                                                                       
Query: 361 tgttacttactttttgttttattaaaaaaatgtttccatcaaccattttatatctttctt 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 559 tgttacttactttttgttttattaaaaaa-tgtttccatcaaccattttatatctttctt 617

                                                                       
Query: 421 ccattgagagacttcctgatttgccctgcatttataaaaagcagaattaaatactggggc 480
           ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccactgagtgactttctgatttgccctgcatttataaaaagcagaattaaatactggggc 677

              
Query: 481 gct 483
           |||
Sbjct: 678 gct 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 880
Length adjustment: 10
Effective length of query: 473
Effective length of database: 870
Effective search space:   411510
Effective search space used:   411510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)