BAC Information

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BAC

Clone NameMSMg01-445N22
Chromosome1 (Build37)
Map Location 173,972,457 - 173,972,863
singlet/doubletsinglet
Overlap genenone
Upstream geneFcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199
Downstream geneNhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N22.T7 (MSMg01no445_n22.b1)MSMg01-445N22.TJ (MSMg01no445_n22.g1)
ACCAG534698AG534699
length756741
length of high quality
(start - end)		423 (44 - 466)407 (71 - 477)
definitionCHROMAT_FILE: MSMg01no445_n22.b1 PHD_FILE: MSMg01no445_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005CHROMAT_FILE: MSMg01no445_n22.g1 PHD_FILE: MSMg01no445_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCTCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCCATTGTTGAAAATGCT
AACCGAGGAATGGATACCGAAAACGTGGTACATCTACCCATGGGAGTACT
ACTCTGCTTATTAAAAAAAATGAATTTTTTAAATTTCTTACCACATTGGA
TGGTCCTGGAGTGGTTTCTTCTTTGTGGGGGGTAACATTTCTCTAAAAAA
CTTTTCTTATTTGTGGTTCCCTTTTAATTGGAGATTATCTCCCTTCCCCT
TGATTTATCCCAAATCTAATTAATTTTTTTTCATTCTTCTCTCCCTTTGA
ATATAC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTCTCCTCTTGGCTGCCCGCAGAACACA
GTCCTCTTCTGCTTCCTGAAGACGTAGAACCCTCAACTCCTCCAGCATCA
TGTCTGCCTGCAGGCGGCCATGCTTTCCACATGTATGTTTTCTGTATAAG
AGTTGCCTTGGTCATGGGGTCTCTTCACAGCAGTGGAAACCGTCACTAAG
ACACAGCATATGTCCTACTTCAGTGTGTAGAGTAGCCTGGTTCCTTCATC
AGCCCTTACCCGGTAGCATCTGTGCTCTGACCTTCATCTGTGTAAGTCTT
ACTCATCCTTCATCTCCACGACCTTCTGAGATGCGGCGTCTTCCAATAGC
ACCAAGGCAGACCCCACTCCACTGTGGTCCTTCTCTGCGTAAGCGTCTCT
CTGTGGCTGCCCTCTCTGCATGGAGATTTATTGCTCTCTCACGTGGATGT
CTATGTAACCTGGGGATAGATGTTTTTAAGTCTCTGAGCAGCTCTTTTCT
TTACAGGGATAGAATGTACGTCCCCCCGCTGGGGCCCGAAAATGTTCAAC
AAAACGAATCTGTAGAAGGGGTATTATAGTCCCAATGTGCCAGGCTTTCC
CACTGTGGATAGGTTAAACAACGTTTTGTTGTCCCACCCGGAAAAAAAGG
TTTGTTTTCTTTCTCTTAGAGGTTTCCATTAATATCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n22.g1 MSMg01no445_n22.g1 CHROMAT_FILE:
MSMg01no445_n22.g1 PHD_FILE: MSMg01no445_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:14 2005
         (407 letters)



>mm_chr1_173972074_173972880
          Length = 807

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtctcctcttggctgcccgcagaacacagtcctcttctgcttcctgaagacgtagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cagtctcctcttggctgcccgcagaacacagtcctcttctgcttcctgaagacgtagaac 731

                                                                       
Query: 61  cctcaactcctccagcatcatgtctgcctgcaggcggccatgctttccacatgtatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cctcaactcctccagcatcatgtctgcctgcaggcggccatgctttccacatgtatgttt 671

                                                                       
Query: 121 tctgtataagagttgccttggtcatggggtctcttcacagcagtggaaaccgtcactaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tctgtataagagttgccttggtcatggggtctcttcacagcagtggaaaccgtcactaag 611

                                                                       
Query: 181 acacagcatatgtcctacttcagtgtgtagagtagcctggttccttcatcagcccttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acacagcatatgtcctacttcagtgtgtagagtagcctggttccttcatcagcccttacc 551

                                                                       
Query: 241 cggtagcatctgtgctctgaccttcatctgtgtaagtcttactcatccttcatctccacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cggtagcatctgtgctctgaccttcatctgtgtaagtcttactcatccttcatctccacg 491

                                                                       
Query: 301 accttctgagatgcggcgtcttccaatagcaccaaggcagaccccactccactgtggtcc 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 490 accttctgagatgcggcgtcttccaatagcagcaaggcagaccccactccactgtggtcc 431

                                                          
Query: 361 ttctctgcgtaagcgtctctctgtggctgccctctctgcatggagat 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttctctgcgtaagcgtctctctgtggctgccctctctgcatggagat 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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