BAC Information

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BAC

Clone NameMSMg01-445N23
Chromosome1 (Build37)
Map Location 46,465,633 - 46,465,979
singlet/doubletsinglet
Overlap genenone
Upstream geneCol5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
Downstream geneLOC666855, Slc39a10, EG227061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N23.T7 (MSMg01no445_n23.b1)MSMg01-445N23.TJ (MSMg01no445_n23.g1)
ACCAG534700AG534701
length765738
length of high quality
(start - end)		442 (38 - 479)---
definitionCHROMAT_FILE: MSMg01no445_n23.b1 PHD_FILE: MSMg01no445_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005CHROMAT_FILE: MSMg01no445_n23.g1 PHD_FILE: MSMg01no445_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
GCCTTGCTCGGTTCAAGGACTACCTAGGACATTGGAACACTGGTGAAGGC
TAATCTAACTTAGCTATATGTCATAATCAATCCTTAGAGGCACTTATAAT
AAAACAATATTGAAGAAAAACACACAGATCCGTTCACCAACTAAAGCAAG
GACAGATTTGGAGCATGCGTTTAACAGGATGCCATGGTTCCAGGAGACTA
CATTTCAGTGAACTTTTCACCTCGGGACTGCGTCCAAATTTTTAGGCCTG
CCATGTGAGTCTCTACTGGAGTAGGTGTGGCAGGTCACCAAGATTCTATT
TGCTTTTCTTTTTCTTGTGAGTCATAGTCTCACTGGCTTAAGATTGCAAC
CCTTACACCTCAAGCTCTTACACTGCTGGCAGTTCAAGTGTGTATCGCCC
TGCCTGGTTGCCACTTCTTGTGTGTGTTGGGGGGAAGGGGTGCTTNCCTT
GTTTTTTGTGNNTNANTTTNNNTTTNNNTTTTTTTTTTTTTTTTTNTTTT
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTT
TTTTTTTTNTNTTGTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTGNGTTNTTTTGTTTTGTTTGTTTTTTTTTTTNTTTGNNTTTTTTT
TTTGTTTTTGTTGTTTTTTTTTTTGTGTTTTTTGTTTTTTTTTGTTTTTT
TTTTTTGTTTTTNTG

ATTATAATGAAGAGGAGGTTGTTCAAACAGGGGGGAAAGAGNGTTTTCGA
AAAAGGGGGNGGGAGTAAAGAAGAGTCATAGAGAGGAGAATTTTACCCAC
CAACCAAACCATAAATTCTCCCCCATCTTAACTTACTTTTACCGTGGGGA
CCACAAATTACCTACTTTCTTTTACCCCTAAAAAGCACGCAATGTAAACG
ACCAAACTAAACGGATCCACCGCCCGATAAGCGACAGCACTCGGCATAGC
TTAACGCATAATGAAAGATAAAAGAGATTTTTTTTTTTCACTATAGAAAA
TATACGGGAACAAAAAGTCATTCGCTTACCCGCCTGTTCCATAAGTAAAT
TATGCCCACCAAAAAAATATTACGCCCCCCACACAAACCCCCCTCATGCC
CCTTTCTTAACTCATAGATTTCCATTCCCTTATTCTTCCTTCAATCACCC
TCCCCCTTCTTTTTATACTATTCCCTTTATCATCCCCCTTAACCACATTC
ATCCATATCCCCCACCTATTCCTCACCGCCTTCATTATCTATTCCCCCCC
TCCTACATCTAATAACGCTTTATCTCGAGAAATCCCTCCTCACCCTATGT
TTCACCTGTACTTCACAATTAATACGATAATATCTATAACCTAAATCAAC
TCTAACATATACCAAACCACATAATTCCCCTTGATCCCACTATACAACAT
ACTCACCCCACCTAATTATTCCCCCCATTGTACATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n23.b1 MSMg01no445_n23.b1 CHROMAT_FILE:
MSMg01no445_n23.b1 PHD_FILE: MSMg01no445_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:14 2005
         (442 letters)



>mm_chr1_46465138_46465979
          Length = 842

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 96  cttagaggcacttataataaaacaatattgaagaaaaacacacagatccgttcaccaact 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 cttagaggcacttataataaaacaatattgaagaaaaacacacagatccgttcaccaact 783

                                                                       
Query: 156 aaagcaaggacagatttggagcatgcgtttaacaggatgccatggttccaggagactaca 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaagcaaggacagatttggagcatgcgtttaacaggatgccatggttccaggagactaca 723

                                                                       
Query: 216 tttcagtgaacttttcacctcgggactgcgtccaaatttttaggcctgccatgtgagtct 275
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 722 tttcagtgaacttttcacctcgggactgcgtccaaatttttaggcctgacatgtgagtca 663

                                                                       
Query: 276 ctactggagtaggtgtggcaggtcaccaagattctatttgcttttctttttcttgtgagt 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctactggagtaggtgtggcaggtcaccaagattctatttgcttttctttttcttgtgagt 603

                                                                       
Query: 336 catagtctcactggcttaagattgcaacccttacacctcaagctcttacactgctggcag 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 catagtctcactggcttaagattgcaacccttacacctcaagctcttacactgctggcag 543

                                                          
Query: 396 ttcaagtgtgtatcgccctgcctggttgccacttcttgtgtgtgttg 442
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttcaagtatgtatcgccctgcctggttgccacttcttgtgtgtgttg 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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