BAC Information

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BAC

Clone NameMSMg01-446E10
Chromosome1 (Build37)
Map Location 124,076,178 - 124,118,775
singlet/doubletdoublet
Overlap geneLOC666971
Upstream geneInsig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666983
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446E10.T7 (MSMg01no446_e10.b1)MSMg01-446E10.TJ (MSMg01no446_e10.g1)
ACCAG535010AG535011
length723733
length of high quality
(start - end)
280 (365 - 644)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no446_e10.b1 PHD_FILE: MSMg01no446_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:45 2005CHROMAT_FILE: MSMg01no446_e10.g1 PHD_FILE: MSMg01no446_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,118,496 - 124,118,775)(124,076,178 - 124,076,426)
sequence
XXXXXXXXXXXXXXXXXXXXXXATATGCCGAGGATGCGCGGAATTAAGCC
TTTTTCCAAGAAAAGTATTAATATTCCACCTTTATGTCCCTTCTTAATGT
CATGTCTGCATATTTCCTTTAGAAGCATTCTGCTTCCTAAGGAGGCAATC
TAGGATATATATTCTCTGATTCGCATCGACCATGATTCTTCCTGTCTTCA
CTTCCCAAATGCTGATATTTCAGACTTGGGCCTCATGCCAAGTTATATGT
TGTCTTCAAGATCAAACCTTCATGTATGATGGCAAACACTGTACCAACTG
AGCTAGGTCTTCATTCCTGTTATATTTACAATTATTTTCTTGATAAATTG
TATGTGTGATTCTGTGATATCAATACGATGCTCTCTCTGTGTTCTTTAAA
GTATACACTGTAGGCCTAGTGCTGAATTACTCCAGGCATGGTGGCAAAAT
TTCCTTGGCAACCACTTACAACCATATTACAACACTTACTGAAATCTTAA
TGAAGACCATCAGAGAAGCTGAATTCTTTCTACAAAATTATTTCCTTGAG
AAATTCTCATTAACCACTAGTGGAAATTGATCAAGTTGTCAGCAAAACTA
CTTCTCCACATACACAACTGAATCACTCAAGGTATCCAGCATACTATATT
ATTATTTTACTTCTAGGCTGGTCTTTCCCATCCTTATACACATCCAACTG
AATCAGTCAAAGTATTCAACATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCAAAAAATTCTCTTAAACTCAGGCAGGTGGCCTGCAGTCT
GGGAAAGGAGAATATTGAAGTGATATGCACTGCTGTATTTACAGTCACTG
ATATGGTGTAGTGTAAAATTGGACATAGATATGTACTGTATGATATTATG
ACTTACACATCTACATCCATACATATACATACCTTTGTATATGTATGTAT
TCATGTGTGTGCTGGTGTATGTGTATATGTACAAATGTATATAATATTAC
ATACATTTATCATTATATTTTTATATTTATTACACTATGTTATATTATTT
TATAATATTAATACATTTCATATTAAATATATTTATTAAATTTAAATAAA
ATAAAATTTAAAATATAAATGTATATAAAATATATTACAATAATGAGAGA
TGGATTTTTTTCTTTTTTTTTTTTTTCTGAGACATGGTTTCTCTGTGTAG
CCCTGGCTGTTCTGGAATTCACTCTGTAGTCCAGGCTGTTCTGAACTCAC
AAGTCTGCCTGCCTCTGCCTCCCAAGTGCTGTTATTAAACCAGTGTTCCA
CTATGCCCGCCCTTAAAACGCCTTTCGAAAAAGACCAACCTTCGCTAATA
TTGTTTTTTTTTCCATGCTCGTCCAACAATTTATGCCTTCCTATTTCATT
TTTCATCATTATCCTCTCCCCATTCTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_e10.b1 MSMg01no446_e10.b1 CHROMAT_FILE:
MSMg01no446_e10.b1 PHD_FILE: MSMg01no446_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:45 2005
         (280 letters)



>mm_chr1_124118296_124118975
          Length = 680

 Score =  487 bits (252), Expect = e-142
 Identities = 273/280 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatatcaatacgatgctctctctgtgttctttaaagtatacactgtaggcctagtgctg 60
           ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct: 480 tgatatcaatacgatgctctctctgtgttctttaaagtacacattgtagggctagtgctg 421

                                                                       
Query: 61  aattactccaggcatggtggcaaaatttccttggcaaccacttacaaccatattacaaca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 420 aattactccaggcatggtggcaaaatttccttgccaaccacttacaaccatattacaaca 361

                                                                       
Query: 121 cttactgaaatcttaatgaagaccatcagagaagctgaattctttctacaaaattatttc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 360 cttactgaaatcttaatgaagaccatcagagaagctgaattctgtctacaaaattatttc 301

                                                                       
Query: 181 cttgagaaattctcattaaccactagtggaaattgatcaagttgtcagcaaaactacttc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 300 cttgagaaattctcattaaccactagtggaaattaatcaagttgtcagcaaaactacttc 241

                                                   
Query: 241 tccacatacacaactgaatcactcaaggtatccagcatac 280
           ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 240 tccacatacacaactgaatcactcagggtatccagcatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no446_e10.g1 MSMg01no446_e10.g1 CHROMAT_FILE:
MSMg01no446_e10.g1 PHD_FILE: MSMg01no446_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:45 2005
         (249 letters)



>mm_chr1_124075978_124076626
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcttaaactcaggcaggtggcctgcagtctgggaaaggagaatattgaagtgatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ttctcttaaactcaggcaggtggcctgcagtctgggaaaggagaagattgaagtgatatg 260

                                                                       
Query: 61  cactgctgtatttacagtcactgatatggtgtagtgtaaaattggacatagatatgtact 120
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 cactgctgtattcacagtcactgatatggtggagtgtaaaattggacatagatatgtact 320

                                                                       
Query: 121 gtatgatattatgacttacacatctacatccatacatatacatacctttgtatatgtatg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatgatattatgacttacacgtctacatccatacatatacatacctttgtatatgtatg 380

                                                                       
Query: 181 tattcatgtgtgtgctggtgtatgtgtatatgtacaaatgtatataatattacatacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcatgtgtgtgctggtgtatgtgtatatgtacaaatgtatataatattacatacatt 440

                    
Query: 241 tatcattat 249
           |||||||||
Sbjct: 441 tatcattat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)