BAC Information

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BAC

Clone NameMSMg01-446H07
Chromosome1 (Build37)
Map Location 52,829,907 - 52,830,152
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
Downstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446H07.T7 (MSMg01no446_h07.b1)MSMg01-446H07.TJ (MSMg01no446_h07.g1)
ACCAG535147AG535148
length735733
length of high quality
(start - end)
246 (67 - 312)467 (69 - 535)
definitionCHROMAT_FILE: MSMg01no446_h07.b1 PHD_FILE: MSMg01no446_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:59 2005CHROMAT_FILE: MSMg01no446_h07.g1 PHD_FILE: MSMg01no446_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTAAATGCGAGAAGATGCGCGGAATTCTG
CCGACTAACACAACTGTTGTGAGCCATGTCCAGCTTAAGGCTGGGAGGGA
GAGACAAAGTCCAGATACCATTTGATCTCAAGGTTTATTCACTACAAGGA
CAAGTGTCAGTCCACAACACATGTATGGGGTACCTGACTCAGAAGCAATT
GGCAGAGAGGCTCACAGGCAAGGTTCACCACTACAATGACAAGCATCATT
TTACTACACACTTACCAGGTACGTGACTCAGAAGCAAGTGGCAAAGAGGC
TCACAGGCAAAACTCTCTANTTGTTTGTCACTCAGCATGTCTTGGGTGGT
GGCTCCTTCTTCTGGATCCTCTATCTCAATACAGTCAGTTATCCTCTGAT
CAGAGAGCAAGATAGCAGGACAGGCTTCACTGTCAGAGCATCAGAGTCTT
TGCCTGCCTGCTGTGAGTCTCTGCTTTTATTAGCTACAAGGGACAGTCTC
ACTCTAGCCAATCATACGCTAACATCACATCTTTACATACTACCTCATTC
TTGCTTGCTACAGAGACCTGATAAGAGCAGGCCGCTCATCCTACTCTTTA
CTACTACACACAGCTGACTCATGCTATTTCGCTGTTCTCCGCATCATCCC
TACTCATTCTTATTCTCATTTTCTTACTTTACTGGCTCTCTTCCCCCATA
TTCTGTCTTGTACACAAACTTTCTCCCTATCTTGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTCATGAGCATCTCT
TTCTTTAGATTTGGGAAGTTTTCTTCAATAATTTTGTTGAAGATGTTTGC
TGGTCCTTTGAGTTGAAAAATCTTCATTCTCATCCACTCCTATTATCCAT
AGGTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGAGTTAG
GATCTTTTTGCATTTTCCATTTTCTTTGATTGTTGTGCCGTTGTTCTCTA
TGGAATCTTCTGCTTTTGTATATTCTCTCTTCCATCTCTTGTATTCTGTT
GATGATGCTGGCATCTATGGTTCCAGATTTCTTTCCTAGGGTTTCTATCT
CCAGCGTTGCCTCACTTTGGGTTTTCTTTATTGTGTCTACTTCCCTTTTT
AGGTCTAGTATGGTTTTGTTCATTTCCATCACCTGTTTGGATGTGTTTTC
CTGTTTTTCTATAAGGACTTCTACCTGTTTGGTTGTGTTTTCCTGTTTTT
CTTTAAGGACTTGTAACTCTTTAGCAGTGTTCTCCTGTATTTCTTTAAGT
GAGTTATTAAATTCCTTCTTTATGTCCTCTACCTTCATCATTGAGATATG
CTTTTTAATTCTAGTTCTCACCTTTTCAGGTGGGGTAACATGCCCTGGTC
CTGTGTTATCTGTGTCGTTTTGTCTTTTTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_h07.b1 MSMg01no446_h07.b1 CHROMAT_FILE:
MSMg01no446_h07.b1 PHD_FILE: MSMg01no446_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:59 2005
         (246 letters)



>mm_chr1_52829707_52830352
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgagccatgtccagcttaaggctgggagggagagacaaagtccagataccatttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgagccatgtccagcttaaggctgggagggagagacaaagtccagataccatttgat 260

                                                                       
Query: 61  ctcaaggtttattcactacaaggacaagtgtcagtccacaacacatgtatggggtacctg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ctcaaggtttattcactacaaggacaagtgtcagtccataacacatgtatggggtacctg 320

                                                                       
Query: 121 actcagaagcaattggcagagaggctcacaggcaaggttcaccactacaatgacaagcat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 actcagaagcaattggcagagaggctcacaggcaaggctcaccactacaatgacaagcat 380

                                                                       
Query: 181 cattttactacacacttaccaggtacgtgactcagaagcaagtggcaaagaggctcacag 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtttactacacacttaccaggtacgtgactcagaagcaagtggcaaagaggctcacag 440

                 
Query: 241 gcaaaa 246
           ||||||
Sbjct: 441 gcaaaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)